MOLMOL statistics

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MOLMOL specifications

Information


Unique identifier OMICS_19957
Name MOLMOL
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Reto Koradi <>

Additional information


http://www.csb.yale.edu/userguides/graphics/molmol/html/ http://www.csb.yale.edu/userguides/graphics/molmol/tutorial/

Publication for MOLMOL

MOLMOL in publications

 (318)
PMCID: 5902452
PMID: 29662055
DOI: 10.1038/s41467-018-03746-3

[…] and additional allowed regions. prosa indicates the fold quality by means of the z-score. the display, analysis, and manipulation of the three-dimensional structures were performed with the program molmol and pymol (the pymol molecular graphics system, version 1.8 schrödinger, llc)., the solvation potential energy was measured for the ten lower energy nmr structures. each structure […]

PMCID: 5897548
PMID: 29681894
DOI: 10.3389/fmicb.2018.00667

[…] stereochemical quality of the lowest energy structures was analyzed by procheck-nmr (). the display, analysis, and manipulation of the three-dimensional structures were performed with the program molmol ()., strains of escherichia coli (atcc 25922) and staphylococcus aureus (atcc 25923) were cultured on bhi agar in aerobic conditions, while strains of aggregatibacter actinomycetemcomitans […]

PMCID: 5890618
PMID: 29526435
DOI: 10.1016/j.str.2018.02.007

[…] structures with the lowest energy values were selected out of 200 and subjected to a water refinement process. the final ensemble of the structure (pdb: 5n7y) was analyzed and represented using molmol () and pymol., chemical shift perturbation assays were carried out at 298k using a bruker avance spectrometer operating at 950 mhz with a txi cryoprobe controlled by topspin 3 (bruker biospin […]

PMCID: 5864730
PMID: 29567943
DOI: 10.1038/s41598-018-22305-w

[…] 20 models with best stereochemistry chosen to represent the solution structure of α-1. pdb id: 6ena. atomic rmsd was calculated over the residues between the first and last cysteine residues using molmol, table . the dali server was used to identify structural homologues, regardless of sequence similarity, fig. ., green crabs (20–50 g) were injected with control (500 µl sterile filtered sea […]

PMCID: 5854672
PMID: 29545539
DOI: 10.1038/s41598-018-23016-y

[…] the entire structure statistics for them were evaluated with procheck and procheck-nmr and summarized in table . all of the structure figures were generated using the pymol (http://pymol.org/) or molmol programs. the structural analysis was displayed in fig. ., since nmr structure of hβ4-loop is available, the pseudo full-length bkα/hβ4 complex can be modeled by in silico method. first, […]


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MOLMOL institution(s)
lnstitut fiir Molekularbiologie und Biophysik, EidgenOssische Teehnische Hochschule-HOnggerberg, Zurich, Switzerland
MOLMOL funding source(s)
Supported by BRUKER/Spectrospin.

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