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MolTalk specifications

Information


Unique identifier OMICS_26390
Name MolTalk
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 3.0
Computer skills Advanced
Requirements
GCC, GNUstep, StepTalk
Maintained No

Versioning


No version available

Maintainers


This tool is not available anymore.

Publication for MolTalk

MolTalk citations

 (3)
library_books

The Path to Enlightenment: Making Sense of Genomic and Proteomic Information

2016
PMCID: 5172447
PMID: 15629052
DOI: 10.1016/S1672-0229(04)02018-2

[…] structures and possible interactions have been predicted, the models need to be validated. Tools for assessing modeled protein structures can be found in the Biotech Validation Suite, Joy, and WhatIf.MolTalk is a computational environment for structural bioinformatics. It interprets PDB-formatted files and creates an object representation of the structure-chain-residue-atom hierarchy. Thus, the P […]

library_books

Cytochrome P450 102A2 Catalyzes Efficient Oxidation of Sodium Dodecyl Sulphate: A Molecular Tool for Remediation

2010
PMCID: 2956967
PMID: 21048857
DOI: 10.4061/2010/125429

[…] n of CYP102A2 was constructed using SWISS-MODEL (http://www.expasy.org/swissmod) [], as described in Axarli et al., 2005 []. Atomic contacts in the complex CYP102A2-palmitoleic acid were analyzed by iMolTalk (http://i.moltalk.org/) [] using a distance threshold set to 4 Angstroms. […]

library_books

Comprehensive Identification and Modified Site Mapping of S Nitrosylated Targets in Prostate Epithelial Cells

2010
PLoS One
PMCID: 2816712
PMID: 20140087
DOI: 10.1371/journal.pone.0009075

[…] ts. Further validation of sequence-to-structure mapping was performed with PROSITE (http://ca.expasy.org/prosite/) searches. Residues and atoms in contact with SNO cysteines were identified with the iMolTalk server (http://i.moltalk.org/) and the Loopp program , with a cutoff distance of 5 Å from the sulfur atom of the cysteine. These protein structures, together with the location of S-nitrosylate […]

Citations

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MolTalk institution(s)
University of Lausanne and Swiss Institute of Bioinformatics, Epalinges s/Lausanne, Switzerland; University of Geneva and Swiss Institute of Bioinformatics, Centre Médicale Universitaire, Geneva, Switzerland
MolTalk funding source(s)
Partially supported by GlaxoSmithKline.

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