MonaLisa statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MonaLisa
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Tool usage distribution map

This map represents all the scientific publications referring to MonaLisa per scientific context
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Associated diseases

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Popular tool citations

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MonaLisa specifications

Information


Unique identifier OMICS_21471
Name MonaLisa
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input format PNT,KEGG,SPPED,PIPE2,PIPE3,PIPE4,SBML,METATOOL,APNN
Output format PNT,SBML,PIPE3,PIPE4,METATOOL,APNN,PLAIN
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License Artistic License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes

Subtools


  • NetViewer
  • Petri net analyzer
  • Petri net converter

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Ina Koch

Additional information


https://sourceforge.net/p/monalisa4pn/wiki/Home/

Publication for MonaLisa

MonaLisa citations

 (3)
library_books

Morphological and Functional Differences between Athletes and Novices in Cortical Neuronal Networks

2017
Front Hum Neurosci
PMCID: 5209359
PMID: 28101012
DOI: 10.3389/fnhum.2016.00660

[…] control network. Therefore, we illustrated the data with functional connectivity from five seed regions (superimposed results of 5 t-tests) and projected the data onto a network brain template (Brain NetViewer; Xia et al., ; Figure ). The clusters of involved brain areas were extracted separately for each seed region and an ICBM152 brain template was used (REST_V1.8; Song et al., ). This three-dim […]

library_books

MONALISA for stochastic simulations of Petri net models of biochemical systems

2015
BMC Bioinformatics
PMCID: 4496887
PMID: 26156221
DOI: 10.1186/s12859-015-0596-y

[…] The simulation module is implemented in Java, version 1.7, as a plug-in of MONALISA. The plotting functionality exploits the JFreeChart-library []. The integration of the library exp4j [] develops the option to evaluate user-defined mathematical expressions. The Java class H […]

library_books

Genome Scale Modeling in Systems Biology: Algorithms and Resources

2014
Curr Genomics
PMCID: 4009841
PMID: 24822031
DOI: 10.2174/1389202915666140319002221

[…] ex assembly processes of the spliceosome [], and many other processes []. Also new PN editing and analysis tools have been developed for the application to biology, for example Cell Illustrator [] or MonaLisa []. For more detailed PN theory, Reisig 1985 and David & Alla 2005 can be considered. […]


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MonaLisa institution(s)
Molecular Bioinformatics Group, Institute of Computer Science, Faculty of Computer Science and Mathematics, Cluster of Excellence Frankfurt ‘Macromolecular Complexes’, Robert-, Frankfurt am Main, Germany

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