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Citations per year

Number of citations per year for the bioinformatics software tool morFeus
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Tool usage distribution map

This map represents all the scientific publications referring to morFeus per scientific context
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morFeus specifications

Information


Unique identifier OMICS_08022
Name morFeus
Interface Web user interface
Restrictions to use None
Programming languages Java, PHP, Python
License GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Bianca H. Habermann

Publication for morFeus

morFeus citations

 (7)
library_books

Quantitative analysis of respiration induced motion of each liver segment with helical computed tomography and 4 dimensional computed tomography

2018
PMCID: 5879734
PMID: 29609631
DOI: 10.1186/s13014-018-1007-0

[…] superiorly during expiration but displayed diversity in the LR direction. Several studies applied 4DCT with DIR to analyze liver motion. Velec et al. deformed CT contours from exhale to inhale using Morfeus, a multi-organ biomechanical model–based DIR algorithm []. Hallman et al. propagated contours that were mostly defined at the phase 30 CT to all other phases using a 3-stage multi-resolution B […]

library_books

New Tools in Orthology Analysis: A Brief Review of Promising Perspectives

2017
Front Genet
PMCID: 5674930
PMID: 29163633
DOI: 10.3389/fgene.2017.00165

[…] clude the use of domain information in order to fix this failure. The most interesting thing about this pipeline is that the search for similarity can be adjusted using BLAST or the Usearch algorithm.MorFeus is a software aiming at detecting orthologs when it is difficult to find orthology relationships among evolutionarily distant sequences. It runs on the Web, but the sequence can serve as an in […]

library_books

Magnitude and influencing factors of respiration induced liver motion during abdominal compression in patients with intrahepatic tumors

2017
PMCID: 5223487
PMID: 28073377
DOI: 10.1186/s13014-016-0762-z

[…] radiation therapy, helical tomotherapy is one of the techniques for overcoming the effects of respiration during abdominal tumor radiotherapy [, ].Liver deformable registration can be evaluated using MORFEUS, a finite element model (FEM)-based multiorgan deformable image registration method developed by RayStation TPS (RaySearch Laboratories AB, Stockholm, Sweden) [, ]. Because of our lack of acce […]

library_books

mRNA export through an additional cap binding complex consisting of NCBP1 and NCBP3

2015
Nat Commun
PMCID: 4595607
PMID: 26382858
DOI: 10.1038/ncomms9192

[…] Orthologous sequences were collected using the web-server morFeus (http://chimborazo.biochem.mpg.de/morfeus). The multiple sequence alignment was generated using mafft and submitted to the Gblocks web-server to select conserved blocks for further phylogeneti […]

library_books

Feasibility and potential benefits of defining the internal gross tumor volume of hepatocellular carcinoma using contrast enhanced 4D CT images obtained by deformable registration

2014
PMCID: 4205285
PMID: 25319176
DOI: 10.1186/s13014-014-0221-7

[…] ages alone []. Therefore, if the GTV generated on an artifact-free APCE 3D CT image could be mapped to all phase images of 4D CT with DR, some of the drawbacks of target delineation could be overcome.MORFEUS allows for the image registration of both single and multiple organs. The latter can be challenging because of the difficulty of modeling the interface between organs using splines, fluid-flow […]

library_books

The Specificity and Flexibility of L1 Reverse Transcription Priming at Imperfect T Tracts

2013
PLoS Genet
PMCID: 3649969
PMID: 23675310
DOI: 10.1371/journal.pgen.1003499

[…] r dish using the calcium phosphate method. Growth medium was changed 5 hours later. One day post-transfection, cells were split into two plates in growth medium supplemented with 1.5 µg/mL puromycin (mORFeus, Life Technologies) or 100 µg/mL hygromycin (L1.3, Life Technologies). Cells were collected 4 days post-transfection by trypsinization, pooled and washed in PBS. Cell pellets were lysed in 500 […]


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morFeus institution(s)
Max Planck Institute of Biochemistry, Martinsried, Germany
morFeus funding source(s)
MV was supported by BMBF-Project 01IH11003C (NGSgoesHPC), JMV was supported by BMBF-Project 0315759 (The Virtual Liver Network (VLN)). This work was supported by the Max Planck Society.

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