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Morpheus specifications


Unique identifier OMICS_08773
Name Morpheus
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 1.2
Stability Stable
Maintained Yes




No version available



  • person_outline Walter de Back

Publication for Morpheus

Morpheus citations


High Performance Agent Based Modeling Applied to Vocal Fold Inflammation and Repair

Front Physiol
PMCID: 5906585
PMID: 29706894
DOI: 10.3389/fphys.2018.00304

[…] instances concurrently on massively parallel computers. more examples include hpc abm frameworks for multi-core cpus such as compucell3d (swat et al., ,), cellsys (hoehme and drasdo, ), and morpheus (starruß et al., ). these frameworks target multi-core cpu acceleration on a single compute node using openmp. in addition, other techniques have been proposed to accelerate specific […]


Comparing individual based approaches to modelling the self organization of multicellular tissues

PLoS Comput Biol
PMCID: 5330541
PMID: 28192427
DOI: 10.1371/journal.pcbi.1005387

[…] different classes of cell-based model. a longer-term challenge is to extend such comparison studies across simulation tools, of which there is an increasing ecosystem, including compucell3d [], morpheus [], episim [], cellsys [], virtualleaf [], biocellion [], biofvm [], lbibcell [] and embryomaker []. we emphasize here the lack of ‘benchmarks’ on which to make such comparisons. we propose […]


A Novel Method to Verify Multilevel Computational Models of Biological Systems Using Multiscale Spatio Temporal Meta Model Checking

PLoS One
PMCID: 4871515
PMID: 27187178
DOI: 10.1371/journal.pone.0154847

[…] span different levels of organization (e.g. cellular/organ) and are encoded using different modelling formalisms (e.g. ordinary differential equations/cellular automata) and software (e.g. morpheus/netlogo); see for a brief comparison of the multilevel computational models considered., each model (m1–m4) has an associated description and type (i.e. deterministic, stochastic […]


Automatic validation of computational models using pseudo 3D spatio temporal model checking

BMC Syst Biol
PMCID: 4272535
PMID: 25440773
DOI: 10.1186/s12918-014-0124-0

[…] are generated on demand a user-defined script calling the model simulator needs to be made available. for the chemotaxis case study a bash script was created to execute the linux version of the morpheus model simulator and translate the simulation output to stml. although writing scripts for the integration of mudi with various model simulators requires expert knowledge, the scripts, […]

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Morpheus institution(s)
Center for Information Services and High Performance Computing, Technische Universität Dresden, Dresden, Germany
Morpheus funding source(s)
German Ministry for Education and Research (BMBF) (0315734, 0316169)

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