MorphoJ statistics

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MorphoJ specifications

Information


Unique identifier OMICS_26284
Name MorphoJ
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Some raw landmark data from tab- or comma-delimited text files or from several of the customary file formats used in other morphometric software.
Input format TSV,CSV
Output data Various kinds of graphical outputs, including scatter plots and other standard types of graphs for visualizing statistical results.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License Apache License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Christian Peter Klingenberg <>

Additional information


http://www.flywings.org.uk/MorphoJ_guide/frameset.htm?index.htm

Publication for MorphoJ

MorphoJ in publications

 (166)
PMCID: 5889077
PMID: 29624590
DOI: 10.1371/journal.pone.0195084

[…] using the variance-covariance matrix of generalized least-squares superimposition residuals. pairwise procrustes distance was used to compare the mean shape between morphogroups using the software morphoj version 1.05 [], and the results were evaluated with a permutation test (10,000 iterations). the misclassification rate of the morphogroups was assessed by a cross-validation analysis […]

PMCID: 5938463
PMID: 29760888
DOI: 10.1002/ece3.4009

[…] of the landmarks, which filters out the location, scale, and rotational information of the landmarks (rohlf & slice, ), and centroid size (cs) were calculated with both coordgen8 (sheets, ) and morphoj v.1.06 (klingenberg, ). cs is calculated as the square root of the summed squared distances of each landmark from the centroid of the landmark configuration (bookstein, ). this cs value […]

PMCID: 5882723
PMID: 29657799
DOI: 10.1098/rsos.172012

[…] package geomorph v. 3.0.3 []. analyses of the dataset were carried out in r v. 3.3.2 [] using the packages geomorph v. 3.0.3 [], morpho v. 2.4.1.1 [], phytools [] and phylotools v. 0.1.2 [], and in morphoj v. 1.06d []. figure 2., a canonical variates analysis (cva) was used to display the separation of the various groups in shape space. this analysis was first run in r using the package morpho […]

PMCID: 5843655
PMID: 29519998
DOI: 10.1038/s41467-018-03334-5

[…] of the brain at the point of transition between midbrain and hindbrain; (5) transition point between hindbrain and spinal cord; and (6) and (7) lateral outermost points of the head along the eyes. morphoj software was used for canonical variate analysis, to quantify and graphically represent change in brain regions in relation to head shape. morphoj software was also used to calculate […]

PMCID: 5841793
PMID: 29513709
DOI: 10.1371/journal.pone.0193437

[…] in symmetrical views of the shell were estimated using osymm []. in order to avoid statistical problems of inflated degrees of freedom associated with analysis of symmetrical objects [], i used morphoj [] to reflect symmetrical landmarks and used only the symmetrical component of one half of shells including midline landmarks for further analyses of symmetrical views. although only one half […]


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MorphoJ institution(s)
Faculty of Life Sciences, University of Manchester, Michael Smith Building, Manchester, UK
MorphoJ funding source(s)
Supported by BBSRC, the European Commission, the Leverhulme Trust, NERC, the Royal Society, and the Wellcome Trust.

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