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MorusDB specifications

Information


Unique identifier OMICS_04696
Name MorusDB
Alternative name Morus genome database
Restrictions to use None
Maintained Yes

Publication for Morus genome database

MorusDB citations

 (6)
library_books

Identification of Morus notabilis MADS box genes and elucidation of the roles of MnMADS33 during endodormancy

2018
Sci Rep
PMCID: 5895635
PMID: 29643336
DOI: 10.1038/s41598-018-23985-0

[…] the gene expression levels among samples (Table ). Values for the roots, bark, winter floral buds, male flowers, and leaves of MnMADSs were obtained from RNA sequencing data (http://morus.swu.edu.cn/morusdb/), which were from single samples. A heatmap was generated based on the log2-transformed (RPKM+1) values using R project software. The expression patterns of MnMADSs during flowering were eval […]

library_books

Auxin Response Factor Genes Repertoire in Mulberry: Identification, and Structural, Functional and Evolutionary Analyses

2017
Genes
PMCID: 5615343
PMID: 28841197
DOI: 10.3390/genes8090202

[…] RNA-Seq reads for M. notabilis for five samples were downloaded from MorusDB []. The NCBI SRA accession for the samples is SRX504963, SRX504944, SRX504924, SRX504906 and SRX504893 for leaf, male flower, winter bud, bark and root tissue respectively. Our group has previ […]

library_books

Evolutionary and functional analysis of mulberry type III polyketide synthases

2016
BMC Genomics
PMCID: 4973071
PMID: 27487946
DOI: 10.1186/s12864-016-2843-7

[…] 441] were obtained from PROSITE (http://prosite.expasy.org/) []. All sequences were then used as queries in a BLASTP search against the mulberry hypothetical protein database (http://morus.swu.edu.cn/morusdb/) []. Mulberry type III PKS genes were also identified by TBLASTN analysis against the mulberry genome with an e-value cut-off of 1e-5. All hits were analyzed using the Fgenesh++ program (http […]

call_split

Genome wide Identification and Structural, Functional and Evolutionary Analysis of WRKY Components of Mulberry

2016
Sci Rep
PMCID: 4967854
PMID: 27477686
DOI: 10.1038/srep30794
call_split See protocol

[…] , respectively), which was previously sequenced by our group. The sequenced MN transcriptome of five developmental stages namely the leaf, root, bark, male flower, and winter bud were downloaded from MorusDB. A de novo transcriptome assembly software, Trinity (version r21040413p1), with default parameters was used to assemble a reference transcriptome from the seven developmental stages. A pre-ass […]

library_books

Identification and characterization of Lateral Organ Boundaries Domain genes in mulberry, Morus notabilis

2016
PMCID: 4792858
PMID: 27014591
DOI: 10.1016/j.mgene.2014.04.004

[…] The Morus database was used (http://morus.swu.edu.cn/morusdb/). Forty-two Arabidopsis LBDs were downloaded from the Plant Transcription Factor Database (http://planttfdb.cbi.edu.cn/) (). The Hidden Markov model (HMM) profile for the LBD family (DUF260, […]

call_split

Characterization and Expression of Genes Involved in the Ethylene Biosynthesis and Signal Transduction during Ripening of Mulberry Fruit

2015
PLoS One
PMCID: 4378970
PMID: 25822202
DOI: 10.1371/journal.pone.0122081
call_split See protocol

[…] nsduction from other plant species were downloaded from GenBank (http://www.ncbi.nlm.nih.gov/Genbank/), and were used as queries to blast against M. notabilis Genome Database (http://morus.swu.edu.cn/morusdb/). This yielded non-redundant full mRNA sequences. The candidate genes were identified using BLASTN and SMART (http://smart.embl-heidelberg.de/).The amino acid sequences involved in the ethyle […]

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MorusDB institution(s)
State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China

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