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MorusDB specifications


Unique identifier OMICS_04696
Name MorusDB
Alternative name Morus genome database
Restrictions to use None
Maintained Yes

Publication for Morus genome database

MorusDB citations


Identification of Morus notabilis MADS box genes and elucidation of the roles of MnMADS33 during endodormancy

Sci Rep
PMCID: 5895635
PMID: 29643336
DOI: 10.1038/s41598-018-23985-0

[…] the gene expression levels among samples (Table ). Values for the roots, bark, winter floral buds, male flowers, and leaves of MnMADSs were obtained from RNA sequencing data (, which were from single samples. A heatmap was generated based on the log2-transformed (RPKM+1) values using R project software. The expression patterns of MnMADSs during flowering were eval […]


Auxin Response Factor Genes Repertoire in Mulberry: Identification, and Structural, Functional and Evolutionary Analyses

PMCID: 5615343
PMID: 28841197
DOI: 10.3390/genes8090202

[…] RNA-Seq reads for M. notabilis for five samples were downloaded from MorusDB []. The NCBI SRA accession for the samples is SRX504963, SRX504944, SRX504924, SRX504906 and SRX504893 for leaf, male flower, winter bud, bark and root tissue respectively. Our group has previ […]


Evolutionary and functional analysis of mulberry type III polyketide synthases

BMC Genomics
PMCID: 4973071
PMID: 27487946
DOI: 10.1186/s12864-016-2843-7

[…] 441] were obtained from PROSITE ( []. All sequences were then used as queries in a BLASTP search against the mulberry hypothetical protein database ( []. Mulberry type III PKS genes were also identified by TBLASTN analysis against the mulberry genome with an e-value cut-off of 1e-5. All hits were analyzed using the Fgenesh++ program (http […]


Genome wide Identification and Structural, Functional and Evolutionary Analysis of WRKY Components of Mulberry

Sci Rep
PMCID: 4967854
PMID: 27477686
DOI: 10.1038/srep30794
call_split See protocol

[…] , respectively), which was previously sequenced by our group. The sequenced MN transcriptome of five developmental stages namely the leaf, root, bark, male flower, and winter bud were downloaded from MorusDB. A de novo transcriptome assembly software, Trinity (version r21040413p1), with default parameters was used to assemble a reference transcriptome from the seven developmental stages. A pre-ass […]


Identification and characterization of Lateral Organ Boundaries Domain genes in mulberry, Morus notabilis

PMCID: 4792858
PMID: 27014591
DOI: 10.1016/j.mgene.2014.04.004

[…] The Morus database was used ( Forty-two Arabidopsis LBDs were downloaded from the Plant Transcription Factor Database ( (). The Hidden Markov model (HMM) profile for the LBD family (DUF260, […]


Characterization and Expression of Genes Involved in the Ethylene Biosynthesis and Signal Transduction during Ripening of Mulberry Fruit

PLoS One
PMCID: 4378970
PMID: 25822202
DOI: 10.1371/journal.pone.0122081
call_split See protocol

[…] nsduction from other plant species were downloaded from GenBank (, and were used as queries to blast against M. notabilis Genome Database ( This yielded non-redundant full mRNA sequences. The candidate genes were identified using BLASTN and SMART ( amino acid sequences involved in the ethyle […]


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MorusDB institution(s)
State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China

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