mosdepth specifications

Unique identifier:
OMICS_20873
Software type:
Application/Script
Restrictions to use:
None
Output data:
Mean per-window depth, the mean per-region given a file of regions.
Operating system:
Unix/Linux
License:
MIT License
Version:
0.1.7
Source code URL:
https://codeload.github.com/brentp/mosdepth/tar.gz/v0.1.7
Name:
mosdepth
Interface:
Command line interface
Input format:
BAM, CRAM
Output format:
BED
Programming languages:
NIM
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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mosdepth distribution

download

mosdepth support

Maintainers

  • Brent Pedersen <>
  • Aaron R. Quinlan <>

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Credits

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Publications

Institution(s)

Department of Human Genetics, University of Utah, UT, USA; Department of Biomedical Informatics, University of Utah, UT, USA; USTAR Center for Genetic Discovery, University of Utah, UT, USA

Funding source(s)

Supported by a US National Human Genome Research Institute awards (NIH R01HG006693 and NIH R01GM124355), as well as a US National Cancer Institute award (NIH U24CA209999).

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