mosdepth specifications

Information


Unique identifier OMICS_20873
Name mosdepth
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format BAM, CRAM
Output data Mean per-window depth, the mean per-region given a file of regions.
Output format BED
Operating system Unix/Linux
Programming languages NIM
License MIT License
Computer skills Advanced
Version 0.1.7
Stability Stable
Source code URL https://codeload.github.com/brentp/mosdepth/tar.gz/v0.1.7
Maintained Yes

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Maintainers


  • person_outline Brent Pedersen <>
  • person_outline Aaron R. Quinlan <>

Publication for mosdepth

mosdepth institution(s)
Department of Human Genetics, University of Utah, UT, USA; Department of Biomedical Informatics, University of Utah, UT, USA; USTAR Center for Genetic Discovery, University of Utah, UT, USA
mosdepth funding source(s)
Supported by a US National Human Genome Research Institute awards (NIH R01HG006693 and NIH R01GM124355), as well as a US National Cancer Institute award (NIH U24CA209999).

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