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MoSDi specifications

Information


Unique identifier OMICS_06271
Name MoSDi
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Tobias Marschall

Publication for MoSDi

MoSDi citations

 (3)
library_books

Development of a novel strategy for fungal transformation based on a mutant locus conferring carboxin resistance in Magnaporthe oryzae

2016
PMCID: 4996803
PMID: 27558019
DOI: 10.1186/s13568-016-0232-x

[…] in this study, we establish a novel strategy for locus-specific integration of exogenous dna via carboxin-resistance reconstitution by a point-mutation (h245l) on succinate dehydrogenase subunit mosdi1. independent transformants derived from the same reconstitution construct showed consistent fluorescent signal and undiversified phenotypes, including hyphae growth, conidiation […]

library_books

Integrative network based approach identifies key genetic elements in breast invasive carcinoma

2015
BMC Genomics
PMCID: 4460623
PMID: 26040466
DOI: 10.1186/1471-2164-16-S5-S2

[…] regulation for this tf-target gene pair. in each of these cases, a directed edge was added between the transcription factor and the target gene. also, we used the motif statistics and discovery (mosdi) [] software to conduct a motif search for all known binding motifs of the tfs represented in the co-expression network against the promoter regions of all genes in the network. if a match […]

library_books

N6 Adenosine Methylation in MiRNAs

2015
PLoS One
PMCID: 4344304
PMID: 25723394
DOI: 10.1371/journal.pone.0118438

[…] foster city, ca, usa)., to discover motifs that discriminate between the 239 immunoprecipitated mirnas and 2555–239 = 2316 remaining mirnas, we used two complementary methods., fist, we used the mosdi software suite []. we generated all iupac consensus motifs of the forms 3–2–2–0, 4–2–2–1 and 5–3–2–1, where the form k-x-y-n means motifs of length k with at most x degenerate characters […]


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MoSDi institution(s)
Computer Science Department, Bioinformatics for High-Throughput Technologies at the Chair of Algorithm Engineering, TU Dortmund, Dortmund, Germany

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