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DNA motif comparison software tools | ChIP sequencing data analysis

The growth of motif databases such as JASPAR, TRANSFAC  and a protein-binding microarray (PBM) motif database named UniPROBE spurred the development of new tools designed to allow researchers to test whether the motif returned by a motif finder is ‘significantly similar’ to a known motif. Such motif search tools may be viewed as ‘BLAST for motifs’, and their utility includes identification of newly detected motifs and automatic clustering of transcription factor into motif families. Source text: Tanaka et al., 2011.

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