Motif-PIE statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Cooperative transcription factor prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

Motif-PIE specifications

Information


Unique identifier OMICS_12039
Name Motif-PIE
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Plants and Fungi
    • Saccharomyces cerevisiae

Versioning


Add your version

Maintainer


  • person_outline Jiang Qian <>

Publication for Motif-PIE

Motif-PIE in publication

PMCID: 4290732
PMID: 25521604
DOI: 10.1186/1752-0509-8-S4-S9

[…] chip-chip data, gene expression data and tfbs data to develop a new framework to identify combinatorial regulation of tfs. yu et al. (2006) [] utilized chip-chip data and developed a program called motif-pie to identify interacting tf binding motif pairs. elati et al. (2007) [] utilized gene expression data and developed a data mining technique called licorn to derive cooperative regulations. […]


To access a full list of publications, you will need to upgrade to our premium service.

Motif-PIE institution(s)
Wilmer Institute, Johns Hopkins University School of Medicine, Baltimore, MD, USA; Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD, USA; Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD, USA; McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA; Department of Applied Biochemistry, Faculty of Agriculture, Utsunomiya University, Japan
Motif-PIE funding source(s)
The research was supported in part by grants from the National Institute of Health (EY015684, EY009769 and EY001765), unrestricted funds from Research to Prevent Blindness, Inc., and by generous gifts from the Guerrieri family and from Robert and Clarice Smith.

Motif-PIE reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Motif-PIE