Motif Sampler pipeline

Motif Sampler specifications

Information


Unique identifier OMICS_06284
Name Motif Sampler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Gert Thijs <>

Information


Unique identifier OMICS_06284
Name Motif Sampler
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Gert Thijs <>

Publication for Motif Sampler

Motif Sampler citations

 (2)
2014
PMCID: 3887101

[…] seven homologous sequences in ehec o157:h7 strain edl933 served as a model for the identification of a consensus sequence in the promoter regions of the target genes using the online software gibbs motif sampler (http://ccmbweb.ccv.brown.edu/gibbs/gibbs.html). the sequence alignment of the lee1, lee4 and lee5 putative sites in other ehec strains, in epec strains, and in c. rodentium […]

2007
PMCID: 1852302

[…] 3.5 fragments, and 86% of blocks were co-aligned on average with 1.7 others. nonetheless, with support from clz and motif sampler, 323 instances of 35 blocks were identified within alignments. motif sampler used independently found 291 instances of 35 blocks., the complementarity of our different phylogenetic footprinting methods was demonstrated by the benchmarking exercise in figure 1. […]

Motif Sampler institution(s)
ESAT-SCD, KULeuven, Leuven, Belgium; Plant Genetics, VIB, University Gent, Gent, Belgium; INRA associated laboratory, VIB, University Gent, Gent, Belgium

Motif Sampler reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Motif Sampler