MotifClick specifications


Unique identifier OMICS_06269
Name MotifClick
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability No
Maintained Yes


No version available

Publication for MotifClick

MotifClick citations


Adaptation to environmental factors shapes the organization of regulatory regions in microbial communities

BMC Genomics
PMCID: 4287501
PMID: 25294412
DOI: 10.1186/1471-2164-15-877

[…] [], and up to 20 through the identification of half-sites motifs []. (2) We also evaluated the performance of our methodology by comparing our results with those obtained with an independent method, MotifClick, that predicts cis-regulatory regions using a graph-based polynomial-time algorithm []. After running both predictors over intergenic E. Coli regions, we observed that the densities of TFBS […]


Elucidating the evolutionary history and expression patterns of nucleoside phosphorylase paralogs (vegetative storage proteins) in Populus and the plant kingdom

BMC Plant Biol
PMCID: 3751785
PMID: 23957885
DOI: 10.1186/1471-2229-13-118

[…] ved from the Populus trichocarpa genome v2.2 in Phytozome ( In silico analyses of these regions were performed using the prediction programs MEME ( and MotifClick ( to determine overrepresented 8 bp motifs [,]. MEME uses an expected-maximization strategy to detect overrepresented motifs whereas MotifClick employs a graph-b […]

MotifClick institution(s)
Department of Bioinformatics and Genomics, Center for Bioinformatics Research, the University of North Carolina at Charlotte, NC, USA

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