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MotifCut specifications

Information


Unique identifier OMICS_06270
Name MotifCut
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Eugene Fratkin

Information


Unique identifier OMICS_06270
Name MotifCut
Interface Web user interface
Restrictions to use None
Programming languages C++
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Eugene Fratkin

Publication for MotifCut

MotifCut citation

library_books

The intelligence in developing systems for molecular biology

2007
Genome Biol
PMCID: 1839118
PMID: 17274837
DOI: 10.1186/gb-2007-8-1-301

[…] techniques, unlike commonly used machine learning techniques, are based on a branch of mathematics called combinatorics (graph theory is part of combinatorics). the method, appropriately named motifcut, can be accessed at and is a graph-theoretical approach to the problem which, through an optimization method called convex optimization, can be solved in polynomial time. the main idea […]


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MotifCut institution(s)
Department of Computer Science, Stanford University, CA, USA

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