Protocols

MotifHound specifications

Information


Unique identifier OMICS_12807
Name MotifHound
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Stephen Michnick

Publication for MotifHound

MotifHound citations

 (2)
library_books

A bioinformatics pipeline to search functional motifs within whole proteome data: a case study of poxviruses

2016
PMCID: 5357487
PMID: 28000080
DOI: 10.1007/s11262-016-1416-9

[…] or PEST-rich motifs). Number of databases were established to catalogue these motifs, including PROSITE, ELM, and Minimotif Miner (MnM) databases [–]. MnM, MEME Suite, QSLiMFinder, SLiMSearch, 3of5, MotifHound, and DoReMi tools can be used to predict motif(s), pattern(s), or shared consensus within input sequence(s) [–]. Another approach uses hidden Markov model (phylo-HMM) to search for evolutio […]

call_split

High throughput methods for identification of protein protein interactions involving short linear motifs

2015
PMCID: 4546347
PMID: 26297553
DOI: 10.1186/s12964-015-0116-8
call_split See protocol

[…] Complementing the experimental approaches, different computational approaches have been developed for the identification of motifs, such as SLiMFinder [], DoReMi [], and MotifHound []. To identify motifs in a given sequence, a combination of sequence properties is typically used such as i) a disorder propensity as motifs are enriched in disordered regions [], ii) sequ […]

MotifHound institution(s)
Département de Biochimie and Centre Robert-Cedergren, Bio-Informatique et Génomique, Université de Montréal, Montreal, QC, Canada
MotifHound funding source(s)
Supported by the "Fonds québécois de la recherche sur la nature et les technologies" postdoctoral fellowships program for financial support; the Human Frontier Science Project postdoctoral fellowships program and the Weizmann Institute of Science for financial support; the Recanati Career Development Chair of Cancer Research; and by Canadian Institutes of Health Research grants MOPGMX-152556 and MOP-GMX-231013.

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