Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

MotifLab

A general workbench for analysing regulatory sequence regions and discovering transcription factor binding sites and cis-regulatory modules. MotifLab can improve performance of binding site predictions by allowing users to integrate several motif discovery tools (including AlignAce, BioProspector, ChIPMunk, MEME, MotifSampler, Priority and Weeder) as well as different types of data, for instance phylogenetic conservation, epigenetic marks, DNase hypersensitive sites, ChIP-Seq data, positional binding preferences of transcription factors, TF-TF interactions, TF-expression and target gene expression.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

0 user reviews

No review has been posted.

MotifLab forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

MotifLab classification

MotifLab specifications

Software type:
Toolkit/Suite
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface, Graphical user interface
Input format:
FASTA, BED, GFF
Programming languages:
Java
Version:
1.08
Maintained:
Yes

MotifLab distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

MotifLab support

Maintainer

  • Kjetil Klepper <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology, Trondheim, Norway

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.