Provides comprehensive maps of candidate regulatory elements encoded in the genomes of model species. Motifmap allows to select a transcription factor (TF), view its binding sequence logo, and list its genome-wide putative binding sites (Motif Search), select a gene and search for transcription factor binding sites (TFBS) in regions upstream and downstream from its transcription start site (Gene Search). In addition, this tool can select a genomic loci and search for overlapping or neighbouring TFBS.
Department of Computer Science, University of California Irvine, Irvine, CA, USA; Institute for Genomics and Bioinformatics, University of California Irvine, Irvine, CA, USA; Department of Developmental and Cell Biology, University of California Irvine, Irvine, CA, USA
MotifMap funding source(s)
Supported in part by National Institutes of Health grants LM010235-01A1 and 5T15LM007743, National Science Foundation grant MRI EIA-0321390 and the UCI Institute for Genomics and Bioinformatics.