motifmatchr statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.


Citations per year

Citations chart

Popular tool citations

chevron_left Motif comparison chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

motifmatchr specifications


Unique identifier OMICS_19118
Name motifmatchr
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.99.8
Stability Stable
Maintained Yes



Add your version


  • person_outline Alicia Schep <>

motifmatchr in publication

PMCID: 5949282
PMID: 29346761
DOI: 10.1016/j.celrep.2017.12.079

[…] as described previously (). the atac-seq signal in promoters was quantified as the number of fragments mapping to the window 400 bp upstream to 100 bp downstream of the tss. for motif analysis, the motifmatchr r package was used to identify motifs from the jaspar 2016 database () using a p value threshold of 10−4. accessibility scores for promoters and motif-containing promoters were determined […]

To access a full list of publications, you will need to upgrade to our premium service.

motifmatchr reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review motifmatchr