motifmatchr statistics

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Citations per year

Number of citations per year for the bioinformatics software tool motifmatchr
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Tool usage distribution map

This map represents all the scientific publications referring to motifmatchr per scientific context
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motifmatchr specifications

Information


Unique identifier OMICS_19118
Name motifmatchr
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.99.8
Stability Stable
Maintained Yes

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Versioning


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Maintainer


  • person_outline Alicia Schep

motifmatchr citation

library_books

INO80 Chromatin Remodeling Coordinates Metabolic Homeostasis with Cell Division

2018
Cell Rep
PMCID: 5949282
PMID: 29346761
DOI: 10.1016/j.celrep.2017.12.079

[…] d as described previously (). The ATAC-seq signal in promoters was quantified as the number of fragments mapping to the window 400 bp upstream to 100 bp downstream of the TSS. For motif analysis, the Motifmatchr R package was used to identify motifs from the JASPAR 2016 database () using a p value threshold of 10−4. Accessibility scores for promoters and motif-containing promoters were determined […]


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