motifmatchr specifications

Information


Unique identifier OMICS_19118
Name motifmatchr
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.99.8
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Alicia Schep <>

motifmatchr in publication

PMCID: 5949282
PMID: 29346761
DOI: 10.1016/j.celrep.2017.12.079

[…] as described previously (). the atac-seq signal in promoters was quantified as the number of fragments mapping to the window 400 bp upstream to 100 bp downstream of the tss. for motif analysis, the motifmatchr r package was used to identify motifs from the jaspar 2016 database () using a p value threshold of 10−4. accessibility scores for promoters and motif-containing promoters were determined […]


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