MotifNetwork specifications

Information


Unique identifier OMICS_09596
Name MotifNetwork
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana

Versioning


No version available

Maintainer


  • person_outline Savithramma P. Dinesh-Kumar

Publication for MotifNetwork

MotifNetwork citation

library_books

Domain Based Identification and Analysis of Glutamate Receptor Ion Channels and Their Relatives in Prokaryotes

2010
PLoS One
PMCID: 2950845
PMID: 20949136
DOI: 10.1371/journal.pone.0012827

[…] get a more comprehensive understanding of our target proteins. In order to efficiently utilize InterProScan, we developed a high throughput workflow around the InterProScan core program, that we call MotifNetwork .Through MotifNetwork, we found that all 100 sequences have a glutamate binding motif, which was expected because we took glutamate binding region as our PSI-BLAST probe. We also found th […]

MotifNetwork institution(s)
Department of Plant Biology and the Genome Center, College of Biological Sciences, University of California, Davis, Davis, CA, USA; Departments of Plant Biology and Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA, and Division of Life Sciences, Gyeongsang National University, Jinju, Korea; Department of Genetics, Stanford University, Stanford, CA, USA

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