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Protocols

MouseMine specifications

Information


Unique identifier OMICS_03812
Name MouseMine
Restrictions to use None
Maintained Yes

Taxon


  • Rodents
    • Mus musculus

Publication for MouseMine

MouseMine citations

 (15)
library_books

Ancestral perinatal obesogen exposure results in a transgenerational thrifty phenotype in mice

2017
Nat Commun
PMCID: 5722856
PMID: 29222412
DOI: 10.1038/s41467-017-01944-z

[…] sen thresholds of statistical significance. First, we defined three subsets of genes from GRCm38/mm10 mouse reference genome sequence associated with DMRs using the tool “Genomic Regions Search” from MouseMine (Supplementary Fig. ). Subset I comprises genes with at least one DMR in the close vicinity (between −1500 bp and +500 bp) of their transcription start site (TSS), representing cases for whi […]

library_books

Mouse Genome Database (MGD) 2018: knowledgebase for the laboratory mouse

2017
Nucleic Acids Res
PMCID: 5753350
PMID: 29092072
DOI: 10.1093/nar/gkx1006

[…] ous advanced query forms are provided to support precise parameter searching. Data may be retrieved from most results pages by downloading text or Excel files, or forwarding results to Batch Query or MouseMine analysis tools (see below).MGD offers batch querying interfaces for data retrieval for users wishing to retrieve data in bulk. The Batch Query tool (http://www.informatics.jax.org/batch) () […]

library_books

Exploring Wound Healing Genomic Machinery with a Network Based Approach

2017
PMCID: 5490412
PMID: 28635674
DOI: 10.3390/ph10020055

[…] ulated by Rigenera®. The ranked list is showed in and the genes in the top 10 are Bag4, Pik3r1, Pik3cb, Map2k6, Map3k7, Mapk10, Mapk11, Pik3ca, Map3k14, and Atf2.The top 10 gene list was analyzed by MouseMine []. In , the GO terms related to wound healing and tissue regeneration are reported. […]

library_books

Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD)

2017
PMCID: 5467553
PMID: 28365740
DOI: 10.1093/database/bax017

[…] a for facilitating study of human health and disease. MGI covers several databases, namely the Mouse Genome Database (), the Gene Expression Database (, ), the Mouse Tumor Biology Database () and the MouseMine project (). The Gene Expression Database (GXD), on which we focus here, is an extensive resource of mouse development expression information. GXD collects and integrates data from a wide var […]

call_split

Mouse Genome Database (MGD) 2017: community knowledge resource for the laboratory mouse

2016
Nucleic Acids Res
PMCID: 5210536
PMID: 27899570
DOI: 10.1093/nar/gkw1040
call_split See protocol

[…] n, GO annotations, list of mutant alleles, MP annotations, RefSNP IDs and OMIM terms. Results are returned as a web display or in tab delimited text or Excel format.MGD access is also powered through MouseMine (http://www.mousemine.org) (), an instance of InterMine that offers flexible querying, templates, iterative refinement of results and linking to other model organism InterMine instances. Mou […]

call_split

Mouse genome database 2016

2015
Nucleic Acids Res
PMCID: 4702860
PMID: 26578600
DOI: 10.1093/nar/gkv1211
call_split See protocol

[…] , GO annotations, list of mutant alleles, MP annotations, RefSNP IDs and OMIM terms. Results are returned as a web display or in tab delimited text or Excel format.MGD access is also provided through MouseMine (http://www.mousemine.org) (), a data warehouse based on InterMine () that hosts MGD data and offers flexible querying, templates, iterative refinement of results and linking to other model […]

Citations

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MouseMine institution(s)
The Jackson Laboratory, Bar Harbor, ME, USA
MouseMine funding source(s)
This work was supported by the NHGRI Grant HG004834, with additional support from NCI Grant CA089713 and NICHD Grant HD062499.

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