mp lipid acc statistics

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mp lipid acc specifications

Information


Unique identifier OMICS_14312
Name mp lipid acc
Interface Web user interface
Restrictions to use None
Input data A PDB model, a PDB ID, a job description.
Output data The lipid accessibility, a PDB structure with the adjusted B-factor (for PyMOL visualization).
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Julia Koehler Leman <>

Additional information


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Publication for mp lipid acc

mp lipid acc in publication

PMCID: 5849751
PMID: 29535329
DOI: 10.1038/s41598-018-22476-6

[…] we then cleaned the structures from ligands, co-factors and other hetero atoms and generated rosetta span files from the embedded structures as described previously. we further used the rosetta mp_lipid_acc application on the input structures to classify residues as lipid-accessible or -inaccessible., histograms were created by counting the occurrences of each amino acid with the computed […]


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mp lipid acc institution(s)
Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA; Departments of Biology and Computer Science, Center for Genomics and Systems Biology, New York University, New York, NY, USA; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA
mp lipid acc funding source(s)
Funding was provided by the Simons Foundation and by NIH R01-GM073151.

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