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MPact specifications


Unique identifier OMICS_04572
Name MPact
Restrictions to use None
Maintained No

Publication for MPact

MPact citations


Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha

Genome Biol
PMCID: 5784723
PMID: 29368664
DOI: 10.1186/s13059-017-1383-z

[…] All samples were controlled in parallel for genomic DNA contamination with RT(–) reactions, in which SuperScript® II Reverse Transcriptase was replaced with nuclease-free water.Two genes, MpAPT3 and MpACT7, reported to be evenly expressed across different M. polymorpha developmental stages [], were used as reference genes. All primers to amplify DNA methyltransferase genes were designed using the […]


Early evolution of the land plant circadian clock

New Phytol
PMCID: 5638080
PMID: 28244104
DOI: 10.1111/nph.14487

[…] e performed as previously described (Holm et al., ), with PCR primers listed in Supporting Information Table . Primers targeting Mpβ‐tubulin2 (MpTUB2; Mapoly0158s0010.1; Buschmann et al., ), MpACTIN (MpACT) and MpADENINE PHOSPHORIBOSYL TRANSFERASE were utilized for normalization of gene expression (Saint‐Marcoux et al., ). Corresponding primers for A. agrestis targeted AaACT and AaTUB. Normalizati […]


Integrated inference and evaluation of host–fungi interaction networks

Front Microbiol
PMCID: 4523839
PMID: 26300851
DOI: 10.3389/fmicb.2015.00764

[…] lar Exchange (IMEx) consortium ():DIP (), IntAct (), MBInfo, MINT (), MatrixDB (), Molecular Connections, I2D (), InnateDB (), UCL-BHF group, UCL London, UniProt Swiss-Prot group, SIB (), BioGRID (), MPact (), BIND (), and MPIDB ().PSICQUIC queries () were used to retrieve human and yeast intraspecies interaction information from this databases on 09/09/2014. Non-coding genes, interaction loops of […]


Identification of Reference Genes for Real Time Quantitative PCR Experiments in the Liverwort Marchantia polymorpha

PLoS One
PMCID: 4370483
PMID: 25798897
DOI: 10.1371/journal.pone.0118678

[…] GAPC1, TUB, or UBQ that are commonly used in other organisms [,,] are poor reference genes in M. polymorpha. Instead, our results indicate that for generic applications, normalization using MpAPT and MpACT is optimal. Orthologs of both genes have been shown to be good reference genes in previous studies with other species [,,,].The suitability of any particular gene as a reference for normalizatio […]


GeneMed: An Informatics Hub for the Coordination of Next Generation Sequencing Studies that Support Precision Oncology Clinical Trials

Cancer Inform
PMCID: 4368061
PMID: 25861217
DOI: 10.4137/CIN.S17282

[…] It is necessary that the four groups work collaboratively in an enterprise environment to coordinate and accomplish the tasks required by the MPACT trial. The workflow and communications among different user groups are shown in , where all major tasks for each working group are sequentially ordered from top to bottom.When a new patient ente […]


cisPath: an R/Bioconductor package for cloud users for visualization and management of functional protein interaction networks

BMC Syst Biol
PMCID: 4331675
PMID: 25708840
DOI: 10.1186/1752-0509-9-S1-S1

[…] apped to UniProtKB accession numbers are discarded.The PINA database includes unified PPI data integrated from six manually curated databases: IntAct [], MINT [], BioGRID [], DIP [], HPRD [] and MIPS MPact []. Like PINA, the iRefIndex database also provides an index of protein interactions integrated from primary interaction databases. PPI data downloaded from the PINA and iRefIndex databases cont […]


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MPact institution(s)
Institute for Bioinformatics, GSF National Research Center for Environment and Health, Neuherberg, Germany

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