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|Alternative name||Magnaporthe grisea Protein-protein Interaction Database|
|Restrictions to use||None|
Publication for Magnaporthe grisea Protein-protein Interaction Database
Conserved RNA structures in the intergenic regions of ambisense viruses
[…] nces. The only consensus stem-loop structure for this cluster, predicted with RNAalifold, contains the hexaloop sequence ‘CCUAAAGG’ (Fig. ), with the first and the last bases forming a base pair. The mPID of the alignment is 0.65 while the SCI is 0.94 (Table ). The high SCI value indicates that the structures of the individual sequences within the cluster are energetically very close to the consen […]
Tinker HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c7sc04531j
[…] phy to include only well-understood and scalable techniques. The high-performance implementation of additional multipolar polarizable force fields will be performed including the SIBFA (in progress), MPID (multipole and induced dipoles, the mapping of the CHARMM Drude polarizable force field on induced dipoles) and AMOEBA 2 models. Efforts will also be devoted to the porting of the third generatio […]
An Introduction to B Cell Epitope Mapping and In Silico Epitope Prediction
[…] pitopes. It also contains immunological protein-protein interactions and biophysical data such as diffusion coefficient and cellular data [, ]. AntiJen is linked to protein database Swiss-Prot, NCBI, MPID, PDB, and PubMed, which enables further in-depth cross referencing. The aim of AntiJen is to integrate quantitative kinetic, thermodynamic, and biophysical data, with functional and cellular info […]
Clustering HLA Class I Superfamilies Using Structural Interaction Patterns
[…] in was calculated using HBPLUS in which hydrogen bonds are defined in accordance to standard geometric parameters. Hydrogen bonding patterns of all complexes presented in this study are available in MPID-T (http://surya.bic.nus.edu.sg/mpidt). […]
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