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MPIDB specifications

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Unique identifier OMICS_02939
Name MPIDB
Alternative name Microbial Protein Interaction DataBase
Restrictions to use None
Maintained No

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Publication for Microbial Protein Interaction DataBase

MPIDB citations

 (5)
library_books

Integrated inference and evaluation of host–fungi interaction networks

2015
Front Microbiol
PMCID: 4523839
PMID: 26300851
DOI: 10.3389/fmicb.2015.00764

[…] sortium ():DIP (), IntAct (), MBInfo, MINT (), MatrixDB (), Molecular Connections, I2D (), InnateDB (), UCL-BHF group, UCL London, UniProt Swiss-Prot group, SIB (), BioGRID (), MPact (), BIND (), and MPIDB ().PSICQUIC queries () were used to retrieve human and yeast intraspecies interaction information from this databases on 09/09/2014. Non-coding genes, interaction loops of self-interacting prote […]

library_books

Prediction of host pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs

2015
BMC Bioinformatics
PMCID: 4456996
PMID: 25887594
DOI: 10.1186/s12859-015-0535-y

[…] teins from Homo sapiens. Intra-species PPIs were further predicted for the proteins from M. tuberculosis and proteins from Homo sapiens using VisANT [], Reactome [], InteroPorc [], IntAct [], DIP [], MPIDB [], MINT [], and HPRD []. A biological interaction network between M. tuberculosis and Homo sapiens was then constructed by the predicted inter- and intra-species interactions. Finally, a databa […]

library_books

A reproducible approach to high throughput biological data acquisition and integration

2015
PeerJ
PMCID: 4493686
PMID: 26157642
DOI: 10.7717/peerj.791

[…] ending on the user’s interest and requirements. Currently, it supports seven repositories: the Gene Expression Omnibus (GEO) (; ), IntAct (; ), BioGRID (), RegulonDB (), STRING (), Bacteriome (), and MPIDB () (), from which data are retrieved, processed and standardized for any organism of interest. At present, this produces more than 2 M interactions from ∼600 K physical interactions (Bacteriome, […]

library_books

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

2013
J Biomed Semantics
PMCID: 3598643
PMID: 23398680
DOI: 10.1186/2041-1480-4-6

[…] towards an RDF/XML output format. PSICQUIC is a standard that defines a common way to access Molecular Interaction resources (IntAct [,], MINT [], BioGrid [], iRefIndex [], MatrixDB [], Reactome [], MPIDB [], ChEMBL []), including more than 1.7 million interactions in 2010/2011, and at the time of this writing this number had grown to 150 million interactions, spanning 27 PSICQUIC services over 1 […]

library_books

SpaK/SpaR Two component System Characterized by a Structure driven Domain fusion Method and in Vitro Phosphorylation Studies

2009
PLoS Comput Biol
PMCID: 2686270
PMID: 19503843
DOI: 10.1371/journal.pcbi.1000401

[…] ach: as of this writing, SpaK and SpaR are not linked in this way, for example, in Prolinks , nor did we find them linked by other sequence-based or empirical methods in DIP, BIND/BOND, MIPS, IntAct, MPIDB, or InterPreTS –. Homology modeling of SpaK and SpaR using a standard methodology and subsequent structure-based searches using a quantitative structure comparison algorithm is what enabled a […]


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MPIDB institution(s)
The J Craig Venter Institute, Chinakville, MD, USA

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