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MRIcro specifications


Unique identifier OMICS_30967
Name MRIcro
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input format NIFTI
Output format BMP,JPEG,PNG,TIF
Operating system Unix/Linux, Windows
Computer skills Medium
Version 1.40
Stability Stable
Maintained Yes




No version available

Additional information

MRIcro citations


The cholinergic contribution to the resting state functional network in non demented Parkinson’s disease

Sci Rep
PMCID: 5955917
PMID: 29769626
DOI: 10.1038/s41598-018-26075-3

[…] dure. Image processing was performed using SPM8 (Wellcome Department of Imaging Neuroscience, Institute of Neurology, UCL, London, UK) under Matlab 6.5.1 for Windows (Math Works, Natick, MA, USA) and MRIcro version 1.37 (Chris Rorden, Columbia, SC, USA). Quantitative analyses were based on the volumes of interest (VOIs), which were defined based on a template in the standard space. All reconstruct […]


Assessment of synchronous neural activities revealed by regional homogeneity in individuals with acute eye pain: a resting state functional magnetic resonance imaging study

PMCID: 5916265
PMID: 29719418
DOI: 10.2147/JPR.S156634

[…] The functional images were analyzed as describe previously. Briefly, the data were filtered by software ( and preprocessed using the Statistical Parametric Mapping SPM8 ( and Data Processing Assistant for rs-fMRI DPARSFA ( DPARSF) software. Th […]


Brain mapping for long term recovery of gait after supratentorial stroke

PMCID: 5916674
PMID: 29668613
DOI: 10.1097/MD.0000000000010453
call_split See protocol

[…] xel-based lesion symptom mapping (VLSM) analysis, we performed the following procedures. First, the lesion of each patient was drawn on the high-resolution T1-weighted image in the native space using MRIcro software ( Second, images of 22 patients with lesions in the right hemisphere were flipped to locate the lesion area of all patients within the left hemisphere to create […]


On the optimal z score threshold for SISCOM analysis to localize the ictal onset zone

PMCID: 5904095
PMID: 29667074
DOI: 10.1186/s13550-018-0381-9

[…] ges was co-registered to the structural MRI, and this transformation was applied to the z-score image. The thresholded z-score map was then co-visualized onto the co-registered preoperative MRI using MRICRO software (Georgia Institute of Technology, Atlanta, GA, USA) for detailed anatomical localization. […]


Altered connection properties of important network hubs may be neural risk factors for individuals with primary insomnia

Sci Rep
PMCID: 5897381
PMID: 29651014
DOI: 10.1038/s41598-018-23699-3

[…] MRIcro software ( was used to ensure data quality. The first 10 time points of the functional images were discarded, due to the possible instability of the initial MRI signal and to all […]


Disrupted Module Efficiency of Structural and Functional Brain Connectomes in Clinically Isolated Syndrome and Multiple Sclerosis

Front Hum Neurosci
PMCID: 5902485
PMID: 29692717
DOI: 10.3389/fnhum.2018.00138

[…] Hyperintense white matter (WM) lesions of each patient were manually delineated on the T2-weighted images by an experienced radiologist (YL) who was blind to the clinical details using MRIcro software. Then the total WM lesion load (TWMLL) for each patient was calculated. […]


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