MRIQC statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MRIQC

Tool usage distribution map

This map represents all the scientific publications referring to MRIQC per scientific context
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Associated diseases


Popular tool citations

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MRIQC specifications


Unique identifier OMICS_15470
Software type Package/Module
Interface Command line interface, Application programming interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 0.9.5
Stability Stable
Numpy, nipype
Source code URL
Maintained Yes




No version available



  • person_outline Oscar Esteban

Publication for MRIQC

MRIQC citations


Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank

PMCID: 5770339
PMID: 29079522
DOI: 10.1016/j.neuroimage.2017.10.034

[…] a unified platform for Quality Control that attempts to incorporate different QC pipelines and their associated metrics. The QC tools to come out of our work are designed to be easily integrated into MRIQC (, ), a project affiliated to PCPQAP.Due to the uncertainty about the suitability of the QC metrics discussed above to successfully assess image quality objectively and to detect the majority of […]


A phenome wide examination of neural and cognitive function

Sci Data
PMCID: 5139672
PMID: 27922632
DOI: 10.1038/sdata.2016.110

[…] ut the mean and standard deviation of background, foreground, gray matter, white matter, CSF, and average inhomogeneity bias are provided for comparison across the subject population (see ).After the MRIQC was completed, each high-resolution T1-weighted anatomical scan was scrubbed of facial features using the mri_deface program. Visual inspection of all outputs was performed to ensure that the fa […]

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MRIQC institution(s)
Department of Psychology, Stanford University, CA, USA; Data Science and Sharing Team, National Institute of Mental Health, Bethesda, MD, USA; Functional MRI Facility, National Institute of Mental Health, Bethesda, MD, USA
MRIQC funding source(s)
Supported by the Laura and John Arnold Foundation.

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