MRM NeAt specifications


Unique identifier OMICS_28531
Name MRM NeAt
Alternative name Magnetic Resonance Microimaging Neurological Atlas
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • Rodents
    • Mus musculus


  • MBIV (Mouse Brain Image Visualizer)


  • person_outline Yu Ma

Publications for Magnetic Resonance Microimaging Neurological Atlas

MRM NeAt citations


High Field MRI Reveals a Drastic Increase of Hypoxia Induced Microhemorrhages upon Tissue Reoxygenation in the Mouse Brain with Strong Predominance in the Olfactory Bulb

PLoS One
PMCID: 4749302
PMID: 26863147
DOI: 10.1371/journal.pone.0148441

[…] 3D before induction of hypoxia. The strong structural contrast of the T2* weighted sequence allowed segmentation of the following neuroanatomical regions in standard space and in accordance with the MRM NeAt []: 1) olfactory bulb (OB), 2) basal ganglia (BG), 3) white matter (WM), 4) cortex and 5) brain stem. The total microhemorrhage number and microhemorrhage lesion volume were analyzed within e […]


Automatic Structural Parcellation of Mouse Brain MRI Using Multi Atlas Label Fusion

PLoS One
PMCID: 3903537
PMID: 24475148
DOI: 10.1371/journal.pone.0086576

[…] as a gold standard. Here we use the atlases in the NUS atlas database as unlabelled test images. We separated the corresponding manual structural labels into left/right hemisphere as we did for the MRM NeAt atlas database, and generated 40 structural labels for each hemisphere.We selected and grouped 24 structural labels (12 in each hemisphere), which were presented in the manual segmentation in […]

MRM NeAt institution(s)
Department of Anesthesiology, Stony Brook University, Stony Brook, NY, USA; Medical Department, Brookhaven National Laboratory, Upton, NY, USA; Department of Neuroscience and Advanced Imaging Program, Mount Sinai School of Medicine, New York, NY, USA; Department of Neuroscience, McKnight Brain Institute, University of Florida, Gainesville, FL, USA; The National High Magnetic Field Laboratory, Tallahassee, FL, USA
MRM NeAt funding source(s)
Supported by NYSTAR, DOE OBER, the NIH through grants R01 EB00233-04, P41 RR16105 and P50 MH58911 and the NHMFL.

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