MrMosaic specifications

Unique identifier:
OMICS_20725
Software type:
Package/Module
Restrictions to use:
None
Input format:
BAM, CRAM
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Requirements:
C-compiler, gada, yaml, argparse, devtools
Name:
MrMosaic
Interface:
Command line interface
Input data:
Genomic loci with measured Bdev values, Cdev values, and genotypes, stored in a tab-delimited file.
Output data:
A file containing all the unfiltered candidate SV calls, A file containing candidate SV calls based on their loglikelihood of being a false positive.
Programming languages:
C, R
Stability:
Stable
Maintained:
Yes

versioning

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No versioning.

MrMosaic distribution

download

MrMosaic support

Documentation

Maintainers

  • Daniel King <>
  • Alejandro Sifrim <>
  • Tomas Fitzgerald <>
  • Raheleh Rahbari <>
  • Emma Hobson <>

forum

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Credits

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Publications

Institution(s)

Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK; Chapel Allerton Hospital, Leeds, UK; Southwest Thames Regional Genetics Centre, St George's Healthcare NHS Trust, London, UK; East Anglian Regional Genetics Service, Addenbrookes Hospital, Cambridge, UK; South East Thames Regional Genetics Centre, Guys Hospital, London, UK; St Michael ′s Hospital, Bristol, UK; Leicester Royal Infirmary, Leicester, UK

Funding source(s)

Supported by the Health Innovation Challenge Fund (HICF-1009-003); a parallel funding partnership between the Wellcome Trust and the Department of Health; and the Wellcome Trust Sanger Institute (WT098051).

User review

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1 user review

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Mike_D

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Hard to install (bugs) and segmentation fault at first step of analysis... Do not recommend.

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