MrTADFinder specifications

Information


Unique identifier OMICS_14589
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data A whole-genome-to-whole genome contact map in a tab-delimited file
Input format TXT
Output data A list of TADs (chromosome number, start and end coordinates)
Output format CSV
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Mark Gerstein <>

MrTADFinder article

MrTADFinder institution(s)
Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA; Department of Computer Science, Yale University, New Haven, CT, USA
MrTADFinder funding source(s)
This work was supported by NIH award U41 HG007000.

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