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Mass spectrometry-based metaproteomic software tools

The enormous challenges of mass spectrometry-based metaproteomics are primarily related to the analysis and interpretation of the acquired data. This includes reliable identification of mass spectra and the meaningful integration of taxonomic and…
MPA
Desktop

MPA MetaProteomeAnalyzer

An intuitive open-source tool for metaproteomics data analysis and…

An intuitive open-source tool for metaproteomics data analysis and interpretation, which includes multiple search engines and the feature to decrease data redundancy by grouping protein hits to…

Unipept
Web

Unipept

An open source web application that is designed for metaproteomics analysis…

An open source web application that is designed for metaproteomics analysis with a focus on interactive data-visualization. Unipept is underpinned by a fast index built from UniProtKB and the NCBI…

iMetaLab
Web
Desktop

iMetaLab

Assists user in metaproteomics research. iMetaLab offers user several functions…

Assists user in metaproteomics research. iMetaLab offers user several functions such as data processing, data visualization or data analysis. This tool contains a processing module that acts straight…

MetaProSIP
Desktop

MetaProSIP

Offers an automated high-throughput solution for a wide range of (13)C or (15)N…

Offers an automated high-throughput solution for a wide range of (13)C or (15)N protein-SIP experiments with special emphasis on the analysis of metaproteomic experiments where differential labeling…

Pipasic
Desktop

Pipasic Peptide intensity-weighted proteome abundance similarity correction

Corrects identification and spectral counting-based quantification results…

Corrects identification and spectral counting-based quantification results using peptide similarity estimation and expression level weighting within a non-negative lasso framework. Pipasic has…

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