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Mass spectrometry-based targeted metabolomic software tools

Targeted metabolomics assay platforms are extremely useful for hypothesis testing. These experiments require extensive planning to define the key metabolites in biochemical pathways of interest. Rate-limiting precursors, end-product pools, critical…
SIMAT
Desktop

SIMAT

An R package that allows the selection of the optimal set of fragments and…

An R package that allows the selection of the optimal set of fragments and retention time windows for target analytes in GC-SIM-MS based analysis. SIMAT provides guidance in choosing fragments for a…

FragPred
Desktop

FragPred

A framework to extend the application of triple quadrupole (QqQ) mass…

A framework to extend the application of triple quadrupole (QqQ) mass spectrometers to large-scale metabolite profiling. We aim to provide a foundation for designing QqQ multiple reaction monitoring…

TagFinder
Desktop

TagFinder

A software tool for the alignment of large GC-MS-based metabolite profiling…

A software tool for the alignment of large GC-MS-based metabolite profiling experiments into statistically accessible data matrices. The matrix generation is directed by co-analysis of retention…

TargetSearch
Desktop

TargetSearch

An open source tool which is a flexible and accurate method for pre-processing…

An open source tool which is a flexible and accurate method for pre-processing very large numbers of GC-MS samples within hours. A novel strategy was developed to iteratively correct and update…

MetabNet
Desktop

MetabNet

An R package for metabolic network analysis to perform targeted metabolome-wide…

An R package for metabolic network analysis to perform targeted metabolome-wide association study of specific metabolites to facilitate detection of their related metabolic pathways and network…

MMSAT
Web

MMSAT Metabolite Mass Spectrometry Analysis Tool

A web-based tool that objectively quantifies every metabolite peak detected in…

A web-based tool that objectively quantifies every metabolite peak detected in a set of samples and aligns peaks across multiple samples to enable quantitative comparison of each metabolite between…

MetaboliteDetec…
Desktop

MetaboliteDetector

A software tool for the efficient and automatic analysis of GC/MS-based…

A software tool for the efficient and automatic analysis of GC/MS-based metabolomics data. Starting with raw MS data, MetaboliteDetector detects and subsequently identifies potential metabolites.…

Precursor
Desktop

Precursor

Identifies minimal precursors set demanded for metabolites production.…

Identifies minimal precursors set demanded for metabolites production. Precursor is a qualitative method to determine bio-chemical producibility of metabolic reaction networks to determine minimal…

ChromaTOF
Desktop

ChromaTOF

An industry standard mass spectrometer data system for acquiring, processing,…

An industry standard mass spectrometer data system for acquiring, processing, and reporting data. Uniquely designed to meet the needs of today’s laboratory professionals in the…

MPP
Desktop

MPP Mass Profiler Professional

A powerful chemometrics platform designed to exploit the high information…

A powerful chemometrics platform designed to exploit the high information content of MS data and can be used in any MS-based differential analysis to determine relationships among two or more sample…

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