Mass spectrometry-based targeted proteomic software tools

MS-based targeted proteomics steps

MS-based targeted proteomics workflow

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MS-based targeted proteomics workflow schema

Mass spectrometry-based targeted proteomic software tools

Most Recent Tools

PIPINO
Desktop

PIPINO Protein-Protein Interaction Optimizer

A software to identify protein-protein interactions based on affinity…

A software to identify protein-protein interactions based on affinity purified-mass spectrometry (AP-MS) data. PIPINO is an automatic data analyser able to facilitate the selection of bona fide…

Decontaminator
Desktop

Decontaminator

A confidence assessment algorithm identifying false-positive protein-protein…

A confidence assessment algorithm identifying false-positive protein-protein interactions in affinity purification-mass spectrometry (AP-MS) experiments. Decontaminator use a limited number of high…

SAINT
Desktop

SAINT Significance Analysis of INTeractome

A computational tool assigning confidence scores to protein-protein…

A computational tool assigning confidence scores to protein-protein interactions based on affinity purification-mass spectrometry (AP-MS) data. SAINT is a method able to analyse a specific dataset to…

CRAPome
Dataset

CRAPome Contaminant Repository for Affinity Purification

A resource to score protein-protein interactions. CRAPome stores, annotates and…

A resource to score protein-protein interactions. CRAPome stores, annotates and standardizes negative controls generated by the proteomics research community and enables their use for scoring…

Most Popular Tools

OpenMS
Desktop

OpenMS

An algorithm to align LC-MS samples and to match corresponding ion species…

An algorithm to align LC-MS samples and to match corresponding ion species across samples.

Skyline
Desktop

Skyline

A freely-available and open source Windows client application for building…

A freely-available and open source Windows client application for building selected reaction monitoring (SRM)/multiple reaction monitoring (MRM), parallel reaction monitoring (PRM - targeted MS/MS),…

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