Mass spectrometry-based targeted proteomic software tools

MS-based targeted proteomics steps

MS-based targeted proteomics workflow

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MS-based targeted proteomics workflow schema

Most recent bioinformatics tools

Reinforce
Desktop
Picky
Web

Picky

Allows to design scheduled parallel reaction monitoring/selected reaction…

Allows to design scheduled parallel reaction monitoring/selected reaction monitoring (PRM/SRM) assays. Picky is a web application that automatically generates optimized and scheduled SRM/PRM assays…

MaRiMba
Desktop

MaRiMba

Creates multiple reaction monitoring (MRM) list from any spectral library.…

Creates multiple reaction monitoring (MRM) list from any spectral library. MaRiMba provides users with the ability to fully customize MRM lists to meet their experimental needs. It offers the…

SWATHProphet
Desktop

SWATHProphet

Analyzes data-independent acquisition (DIA) mass spectrometry (MS) data with…

Analyzes data-independent acquisition (DIA) mass spectrometry (MS) data with precursor ion assays of a spectral library. SWATHProphet can detect fragment ion interferences. They can be removed either…

Most popular analytical software

OpenMS
Desktop

OpenMS

Allows to manage and analyse Liquid chromatography coupled to mass spectrometry…

Allows to manage and analyse Liquid chromatography coupled to mass spectrometry (LC-MS) data. OpenMS is a programming library and tool collection integrated into full-featured workflow systems, such…

Skyline
Desktop

Skyline

A freely-available and open source Windows client application for building…

A freely-available and open source Windows client application for building selected reaction monitoring (SRM)/multiple reaction monitoring (MRM), parallel reaction monitoring (PRM - targeted MS/MS),…

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