Mass spectrometry-based targeted proteomic software tools

MS-based targeted proteomics steps

MS-based targeted proteomics workflow

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MS-based targeted proteomics workflow schema

Mass spectrometry-based targeted proteomic software tools

Most Recent Tools

SRM Collider
Web
Desktop

SRM Collider Selected Reaction Monitoring Collider

Calculates nonredundant theoretical selected reaction monitoring (SRM) assays.…

Calculates nonredundant theoretical selected reaction monitoring (SRM) assays. SRM Collider is based on predicted retention times and empirical fragment ion intensities to proceed simulations. It can…

compPASS
Desktop

compPASS comparative proteomic analysis software suite

Allows to analyze proteomic data. The compPASS method gives confidence…

Allows to analyze proteomic data. The compPASS method gives confidence measurements to interactions from parallel non-reciprocal proteomic datasets in using unbiased metrics. This tool is applicable…

MiST
Web
Desktop

MiST mass spectrometry interaction statistics

Discovers protein interactions in an unbiased manner. MiST allows to perform…

Discovers protein interactions in an unbiased manner. MiST allows to perform quality controls, to process raw affinity purification mass spectrometry (APMS) data, and to prioritize biologically…

compleXView
Web

compleXView

Offers interactive graphical features for the manipulation and interpretation…

Offers interactive graphical features for the manipulation and interpretation of the interaction maps. With compleXView user can colour preys based on their relative abundances in single-bait…

Most Popular Tools

OpenMS
Desktop

OpenMS

An algorithm to align LC-MS samples and to match corresponding ion species…

An algorithm to align LC-MS samples and to match corresponding ion species across samples.

Skyline
Desktop

Skyline

A freely-available and open source Windows client application for building…

A freely-available and open source Windows client application for building selected reaction monitoring (SRM)/multiple reaction monitoring (MRM), parallel reaction monitoring (PRM - targeted MS/MS),…

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