Mass spectrometry-based targeted proteomic software tools

MS-based targeted proteomics steps

MS-based targeted proteomics workflow

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MS-based targeted proteomics workflow schema

Mass spectrometry-based targeted proteomic software tools

Most Recent Tools

SFINX
Desktop
Web

SFINX Straightforward Filtering INdeX

Provides access to the straightforward filtering index (SFINX) for the…

Provides access to the straightforward filtering index (SFINX) for the separation of true positive from false positive protein interactions in affinity purification – mass spectrometry (AP-MS)…

Swiss Mass…
Desktop
Web

Swiss Mass Abacus

Calculates peptide and glycopeptide masses. Swiss Mass Abacus is purposefully…

Calculates peptide and glycopeptide masses. Swiss Mass Abacus is purposefully kept as simple as a basic calculator executing arithmetic operations. It applies a calculator using algebraic precedence…

mzQuantML
Desktop

mzQuantML

Improves the capabilities for open-source software development in proteomics,…

Improves the capabilities for open-source software development in proteomics, including re-analysis and visualization of data sets. Importantly, mzQuantML ensures that data sets submitted to public…

LFQuant
Desktop

LFQuant label-free fast quantitative

Analyses high-resolution LC-MS/MS proteomics data based on database searching.…

Analyses high-resolution LC-MS/MS proteomics data based on database searching. LFQuant can handle large-scale label-free data with fractionation such as SDS-PAGE and 2D LC. It is easy to use and…

Most Popular Tools

OpenMS
Desktop

OpenMS

An algorithm to align LC-MS samples and to match corresponding ion species…

An algorithm to align LC-MS samples and to match corresponding ion species across samples.

Skyline
Desktop

Skyline

A freely-available and open source Windows client application for building…

A freely-available and open source Windows client application for building selected reaction monitoring (SRM)/multiple reaction monitoring (MRM), parallel reaction monitoring (PRM - targeted MS/MS),…

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