Mass spectrometry-based targeted proteomic software tools

MS-based targeted proteomics steps

MS-based targeted proteomics workflow

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MS-based targeted proteomics workflow schema

Mass spectrometry-based targeted proteomic software tools

Most Recent Tools

Desktop app
mzQuantML mzQuantML

mzQuantML

Improves the capabilities for open-source software development in proteomics,…

Improves the capabilities for open-source software development in proteomics, including re-analysis and visualization of data sets. Importantly, mzQuantML ensures that data sets submitted to public…

Desktop app
label-free fast… label-free fast quantitative

LFQuant label-free fast quantitative

Analyses high-resolution LC-MS/MS proteomics data based on database searching.…

Analyses high-resolution LC-MS/MS proteomics data based on database searching. LFQuant can handle large-scale label-free data with fractionation such as SDS-PAGE and 2D LC. It is easy to use and…

Global Natural… Global Natural Products Social Molecular…

GNPS Global Natural Products Social Molecular Networking

An open-access knowledge base for community-wide organization and sharing of…

An open-access knowledge base for community-wide organization and sharing of raw, processed or identified tandem mass (MS/MS) spectrometry data. GNPS provides a community-led knowledge space in which…

Web app
PeptidePicker PeptidePicker

PeptidePicker

Generates a list of the most appropriate surrogate peptides for target proteins…

Generates a list of the most appropriate surrogate peptides for target proteins to be analyzed by Liquid Chromatography/Multiple Reaction Monitoring-Mass Spectrometry (LC/MRM-MS). PeptidePicker…

Most Popular Tools

Desktop app
OpenMS OpenMS

OpenMS

An algorithm to align LC-MS samples and to match corresponding ion species…

An algorithm to align LC-MS samples and to match corresponding ion species across samples.

Desktop app
Skyline Skyline

Skyline

A freely-available and open source Windows client application for building…

A freely-available and open source Windows client application for building selected reaction monitoring (SRM)/multiple reaction monitoring (MRM), parallel reaction monitoring (PRM - targeted MS/MS),…

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