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Mass spectrometry-based targeted proteomic software tools

MS-based targeted proteomics steps

MS-based targeted proteomics workflow

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MS-based targeted proteomics workflow schema

Most recent bioinformatics tools

MSq
Desktop

MSq

Allows users to pre-process label-free multiple reaction monitoring (MRM) data.…

Allows users to pre-process label-free multiple reaction monitoring (MRM) data. MSq aims to provide an automatic method for assisting in removing inaccurate transitions, problematic peptides or…

MRM…
Desktop

MRM pre-processing

Provides a method for picking high quality transitions and multiple reactions…

Provides a method for picking high quality transitions and multiple reactions monitoring (MRM) runs without adding external information. MRM pre-processing is an R package that includes two mains…

SRMBuilder
Desktop

SRMBuilder

Facilitates processing of the post-acquisition data files and validation of…

Facilitates processing of the post-acquisition data files and validation of quantification result for scale selected reaction monitoring (SRM). SRMBuilder analyzes large SRM data from multiple file…

Reinforce
Desktop

Most popular analytical software

OpenMS
Desktop

OpenMS

Allows to manage and analyse Liquid chromatography coupled to mass spectrometry…

Allows to manage and analyse Liquid chromatography coupled to mass spectrometry (LC-MS) data. OpenMS is a programming library and tool collection integrated into full-featured workflow systems, such…

Skyline
Desktop

Skyline

A freely-available and open source Windows client application for building…

A freely-available and open source Windows client application for building selected reaction monitoring (SRM)/multiple reaction monitoring (MRM), parallel reaction monitoring (PRM - targeted MS/MS),…

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