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Mass spectrometry-based untargeted metabolomic software tools

Metabolomics is an emerging field of study in post-genomics, which aims at comprehensive analysis of small organic molecules in biological systems (Patti et al., 2012). Techniques of mass spectrometry coupled to liquid chromatography (LC–MS) stand out as dominant methods…

MS-based untargeted metabolomics steps

MS-based untargeted metabolomics workflow

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MS-based untargeted metabolomics workflow schema

Experts in MS-based untargeted metabolomics

They share and annotate bioinformatics tools

  • Victor Sabarly's avatar image
    Victor Sabarly
    Omics Services, Paris, France

Most recent bioinformatics tools

ChromA
Web

ChromA Chromatogram Alignment

Provides different visual representations of the alignment, focusing on…

Provides different visual representations of the alignment, focusing on differences and similarities between the chromatograms. ChromA is an easily accessible tool for retention time alignment of gas…

AntDAS
Desktop

AntDAS Automatic Data Analysis Strategy

Provides nontargeted data analysis strategy (AntDAS) for ultraperformance…

Provides nontargeted data analysis strategy (AntDAS) for ultraperformance liquid chromatography hyphenated with high resolution time-of-flight mass spectrometer (UPLC-QTOF)-based nontargeted…

MetaQuant
Desktop

MetaQuant

Provides a program for the quantitative analysis of high throughput Gas…

Provides a program for the quantitative analysis of high throughput Gas Chromatography-Mass Spectrometry (GC-MS)-based metabolomics data. MetaQuant is intended to automatically determine the accurate…

MSFACTs
Desktop

MSFACTs Metabolomics Spectral Formatting, Alignment and Conversion Tools

Imports, aligns, and reformats spectral and chromatographic data. MSFACTs is an…

Imports, aligns, and reformats spectral and chromatographic data. MSFACTs is an application that provides an automated, rapid, and flexible means of reducing large complex…

Most popular analytical software

BatMass
Desktop

BatMass

A software package which allows to perform quick quality control of raw LC/MS…

A software package which allows to perform quick quality control of raw LC/MS data through its fast visualization capabilities. BatMass also serves as a testbed for developers of LC/MS data…

LipidMatch
Desktop

LipidMatch

Allows annotation of lipids across a wide range of high resolution tandem mass…

Allows annotation of lipids across a wide range of high resolution tandem mass spectrometry (MS/MS) studies. LipidMatch is based on an accurate assumption of multiple co-eluting lipids sharing m/z…

PiMP
Web

PiMP Polyomics integrated Metabolomics Pipeline

Allows users to analyze and visualize liquid chromatography – mass…

Allows users to analyze and visualize liquid chromatography – mass spectrometry (LC-MS) data. PiMP is a comprehensive and integrated web enabled pipeline that consists of five tasks: (1) project…

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