Mass spectrometry-based untargeted metabolomic software tools

Metabolomics is an emerging field of study in post-genomics, which aims at comprehensive analysis of small organic molecules in biological systems (Patti et al., 2012). Techniques of mass spectrometry coupled to liquid chromatography (LC–MS) stand out as dominant methods…

MS-based untargeted metabolomics steps

MS-based untargeted metabolomics workflow

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MS-based untargeted metabolomics workflow schema

Most recent bioinformatics tools

MS-MS Fragment…
Dataset

MS-MS Fragment Viewer

Provides a visualization tool of tandem mass-spectrometry (MS-MS) Fragment.…

Provides a visualization tool of tandem mass-spectrometry (MS-MS) Fragment. MS-MS Fragment Viewer is a database for metabolomics which consists of the FT-MS, IT- and FT-MS/MS spectral data with…

KomicMarket
Dataset

KomicMarket Kazusa Omics Data Market

Compiles metabolite annotations. KomicMarket is a database of annotations of…

Compiles metabolite annotations. KomicMarket is a database of annotations of metabolite peaks that were detected by mass spectrometers (MSs) in metabolomics studies. Data were obtained with…

R2DGC
Desktop

R2DGC

Allows users to perform Two Dimensional Gas Chromatography-Mass Spectrometry…

Allows users to perform Two Dimensional Gas Chromatography-Mass Spectrometry (2D-GCMS) derived metabolite peak alignment and identification. R2DGC uses individual sample files including basic peak…

PiMP
Desktop
Web

PiMP Polyomics integrated Metabolomics Pipeline

Allows users to analyze and visualize liquid chromatography – mass…

Allows users to analyze and visualize liquid chromatography – mass spectrometry (LC-MS) data. PiMP is a comprehensive and integrated web enabled pipeline that consists of five tasks: (1) project…

Most popular analytical software

BatMass
Desktop

BatMass

A software package which allows to perform quick quality control of raw LC/MS…

A software package which allows to perform quick quality control of raw LC/MS data through its fast visualization capabilities. BatMass also serves as a testbed for developers of LC/MS data…

LipidMatch
Desktop

LipidMatch

Allows annotation of lipids across a wide range of high resolution tandem mass…

Allows annotation of lipids across a wide range of high resolution tandem mass spectrometry (MS/MS) studies. LipidMatch is based on an accurate assumption of multiple co-eluting lipids sharing m/z…

Curators for MS-based untargeted metabolomics

  • Victor Sabarly's avatar image
    Victor Sabarly
    Omics Services, Paris, France
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