Mass spectrometry-based untargeted metabolomic software tools

Metabolomics is an emerging field of study in post-genomics, which aims at comprehensive analysis of small organic molecules in biological systems (Patti et al., 2012). Techniques of mass spectrometry coupled to liquid chromatography (LC–MS) stand out as dominant methods…

MS-based untargeted metabolomics steps

MS-based untargeted metabolomics workflow

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MS-based untargeted metabolomics workflow schema

Most recent bioinformatics tools

IE-Omics
Desktop

IE-Omics

Generates exclusion lists from open-source formatted data easily converted from…

Generates exclusion lists from open-source formatted data easily converted from various vendor formats. IE-Omics is an R script that applies iterative exclusion to traditional data-dependent tandem…

proFIA
Desktop

proFIA

Implements a methodology to pre-process FIA-HRMS raw data (netCDF, mzData,…

Implements a methodology to pre-process FIA-HRMS raw data (netCDF, mzData, mzXML, and mzML). proFIA is an R package that includes noise modelling, injection peak reconstruction, band detection and…

LipidPioneer
Desktop

LipidPioneer

Permits to create exact masses and molecular formulas of lipid species.…

Permits to create exact masses and molecular formulas of lipid species. LipidPioneer provides about 60 lipid classes and offers also unique lipid species.

LipidMatch
Desktop

LipidMatch

Allows annotation of lipids across a wide range of high resolution tandem mass…

Allows annotation of lipids across a wide range of high resolution tandem mass spectrometry (MS/MS) studies. LipidMatch is based on an accurate assumption of multiple co-eluting lipids sharing m/z…

Most popular analytical software

BatMass
Desktop

BatMass

A software package which allows to perform quick quality control of raw LC/MS…

A software package which allows to perform quick quality control of raw LC/MS data through its fast visualization capabilities. BatMass also serves as a testbed for developers of LC/MS data…

Curators for MS-based untargeted metabolomics

  • Victor Sabarly's avatar image
    Victor Sabarly
    Omics Services, Paris, France
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