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Mass spectrometry-based untargeted metabolomic software tools

Mass spectrometry software tools

MS-based untargeted metabolomics applications

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MS-based untargeted metabolomics workflow schema

Metabolomics is an emerging field of study in post-genomics, which aims at comprehensive analysis of small organic molecules in biological systems (Patti et al., 2012). Techniques of mass spectrometry coupled to liquid chromatography (LC–MS) stand out as dominant methods in metabolomic experiments (Dettmer et al., 2007).
Curator: Victor Sabarly

MS-based untargeted metabolomics Curator
Victor Sabarly avatar
Victor Sabarly

Most Recent Tools

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Mass Isotopolome Analyzer

OMIC_12427
Metabolite identification

Mass Isotopolome Analyzer
MIA

A software tool to determine, visualize and analyze mass isotopomer distributions across…

A software tool to determine, visualize and analyze mass isotopomer distributions across multiple GC–EI-MS datasets in a non-targeted manner. MIA helps to reveal changes in metabolic fluxes, visualizes metabolic proximity of isotopically enriched…

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intelligent Metabolomic Quantitation

OMIC_11790
Data preprocessing

intelligent Metabolomic Quantitation
iMet-Q

An automated tool with friendly user interfaces for quantifying metabolites in full-scan…

An automated tool with friendly user interfaces for quantifying metabolites in full-scan liquid chromatography-mass spectrometry (LC-MS) data. iMet-Q has a complete quantitation procedure for noise removal, peak detection and peak alignment.…

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MetaNetter

OMIC_11605
Interpretation

MetaNetter

A Cytoscape plugin dedicated to the inference and visualization of high-resolution mass…

A Cytoscape plugin dedicated to the inference and visualization of high-resolution mass spectrometry data sets. The inference is achieved using a defined list of putative biochemical transformations. The flexibility provided by this tool allows for…

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MSPrep

OMIC_10676
Data preprocessing

MSPrep

An R package for post-processing of metabolomic data. The primary functions of the MSPrep…

An R package for post-processing of metabolomic data. The primary functions of the MSPrep package are summarization of replicates, filtering, imputation of missing data, normalization and/or batch effect adjustment and dataset diagnostics.

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