Mass spectrometry-based untargeted proteomic software tools

MS-based untargeted proteomics steps

MS-based untargeted proteomics workflow

Click the icons of the schema to view tools

MS-based untargeted proteomics workflow schema
A number of technologies can be used to study proteomes, but arguably none is more powerful than mass spectrometry (MS; Aebersold and Mann, 2003; Cravatt et al., 2007; Domon and Aebersold, 2010). There are two fundamentally different MS-based…

Mass spectrometry-based untargeted proteomic software tools

Most Recent Tools

Desktop app
Protein Digestion… Protein Digestion Simulator

Protein Digestion Simulator

Reads a text file containing protein or peptide sequences and outputs the data…

Reads a text file containing protein or peptide sequences and outputs the data to a tab-delimited file. The Protein Digestion Simulator can optionally digest the input sequences using trypsin,…

Desktop app
MultiAlign MultiAlign

MultiAlign

Aligns multiple liquid chromatography-mass spectrometry (LC-MS) datasets to one…

Aligns multiple liquid chromatography-mass spectrometry (LC-MS) datasets to one another by clustering mass and chromatographic elution features across datasets. The MultiAlign application provides…

Desktop app
LcMsSpectator LcMsSpectator

LcMsSpectator

Presents the results from ProMex and MSPathFinder in a format that allows quick…

Presents the results from ProMex and MSPathFinder in a format that allows quick manual evaluation of critical attributes for high-confidence proteoform identifications. LcMsSpectator is a standalone…

Desktop app
EigenMS EigenMS

EigenMS

Uses singular value decomposition to capture and remove biases from liquid…

Uses singular value decomposition to capture and remove biases from liquid chromatography-mass spectrometry (LC-MS) peak intensity measurements. EigenMS is an adaptation of the surrogate variable…

Most Popular Tools

Desktop app
Xlink Analyzer Xlink Analyzer

Xlink Analyzer

A software tool for visualization and analysis of cross-linking mass…

A software tool for visualization and analysis of cross-linking mass spectrometry (XL-MS) data in the context of the three-dimensional structures. Xlink Analyzer enables automatic visualization of…

Desktop app
Metriculator Metriculator

Metriculator

A software tool designed to facilitate long-term storage of extensive…

A software tool designed to facilitate long-term storage of extensive performance metrics. Metriculator features a web interface that generates interactive comparison plots for contextual…

Desktop app
OpenMS OpenMS

OpenMS

An algorithm to align LC-MS samples and to match corresponding ion species…

An algorithm to align LC-MS samples and to match corresponding ion species across samples.

Desktop app
MaxQuant MaxQuant

MaxQuant

A quantitative proteomics software package designed for analyzing large…

A quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. MaxQuant is specifically aimed at high-resolution MS data. Several labeling techniques as well as…

Related Websites
Advertisements
Join Omic Community

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.