Mass spectrometry-untargeted proteomic data analysis software tools

Mass spectrometry-untargeted proteomic data analysis software tools Mass spectrometry (MS) is one of the most powerful technologies to study proteins and proteomes. There are two fundamentally different MS-based strategies for analyzing proteomes: discovery-based (untargeted) identification and targeted quantification. With a discovery-based strategy, the goal is usually to identify as many proteins as possible. The goal of a targeted proteomics experiment is to monitor a select few proteins of interest with high sensitivity, reproducibility and quantitative accuracy.

Data preprocessing

Data processing

Quantification

Data analysis

Data visualization

Enrichment analysis

Workflows

File manipulation

Utilities

Unclassified tools