Mass spectrometry-based untargeted proteomic software tools

A number of technologies can be used to study proteomes, but arguably none is more powerful than mass spectrometry (MS; Aebersold and Mann, 2003; Cravatt et al., 2007; Domon and Aebersold, 2010). There are two fundamentally different MS-based strategies for analyzing proteomes:…

MS-based untargeted proteomics steps

MS-based untargeted proteomics workflow

Click the icons of the schema to view tools

MS-based untargeted proteomics workflow schema

Most recent bioinformatics tools

RAMM
Desktop

RAMM RNAModMapper

Allows interpretation of collisional-induced dissociation (CID) data from…

Allows interpretation of collisional-induced dissociation (CID) data from oligonucleotides. RAMM can map interpreted tandem mass spectrometry (MS/MS) sequences onto RNA sequences. It enables higher…

mSpecs Editor
Desktop

mSpecs Editor

Allows management and edition of mass spectral libraries in the field of…

Allows management and edition of mass spectral libraries in the field of metabolomics. mSpecs Editor provides capabilities for the automatic management and calculation of libraries though its…

Brukin2D
Desktop

Brukin2D

Provides a way to overview a complete chromatograph analysis. Brukin2D allows…

Provides a way to overview a complete chromatograph analysis. Brukin2D allows visualization, evaluation, procession and comparison of Liquid Chromatography-Mass Spectrometry (LC-MS) data. It…

pMatch
Desktop

pMatch

Identifies unanticipated post-translational modifications (PTMs) from tandem…

Identifies unanticipated post-translational modifications (PTMs) from tandem mass spectrometry (MS/MS) data. pMatch is a dedicated open spectral library search tool that supports an entire workflow…

Most popular analytical software

Xlink Analyzer
Desktop

Xlink Analyzer

A software tool for visualization and analysis of cross-linking mass…

A software tool for visualization and analysis of cross-linking mass spectrometry (XL-MS) data in the context of the three-dimensional structures. Xlink Analyzer enables automatic visualization of…

Metriculator
Desktop

Metriculator

A software tool designed to facilitate long-term storage of extensive…

A software tool designed to facilitate long-term storage of extensive performance metrics. Metriculator features a web interface that generates interactive comparison plots for contextual…

BatMass
Desktop

BatMass

A software package which allows to perform quick quality control of raw LC/MS…

A software package which allows to perform quick quality control of raw LC/MS data through its fast visualization capabilities. BatMass also serves as a testbed for developers of LC/MS data…

OpenMS
Desktop

OpenMS

Allows to manage and analyse Liquid chromatography coupled to mass spectrometry…

Allows to manage and analyse Liquid chromatography coupled to mass spectrometry (LC-MS) data. OpenMS is a programming library and tool collection integrated into full-featured workflow systems, such…

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