Mass spectrometry-based untargeted proteomic software tools

MS-based untargeted proteomics steps

MS-based untargeted proteomics workflow

Click the icons of the schema to view tools

MS-based untargeted proteomics workflow schema
A number of technologies can be used to study proteomes, but arguably none is more powerful than mass spectrometry (MS; Aebersold and Mann, 2003; Cravatt et al., 2007; Domon and Aebersold, 2010). There are two fundamentally different MS-based…

Mass spectrometry-based untargeted proteomic software tools

Most Recent Tools

MathIOmica-MSVi…
Desktop

MathIOmica-MSViewer

Facilitates the visualization and exploration of spectra from open format mass…

Facilitates the visualization and exploration of spectra from open format mass spectrometry (MS) files. MathIOmica-MSViewer is an add-on graphical user interface (GUI) utility for the Mathematica…

DeuteRater
Desktop

DeuteRater

Measures protein turnover from metabolic D2O labeling. DeuteRater uses…

Measures protein turnover from metabolic D2O labeling. DeuteRater uses theoretical predictions for label-dependent change in isotope abundance and inter-peak (neutromer) spacing within the isotope…

MALDIViz
Web

MALDIViz

Can be used to do quality checks, visualizations and analysis of mass…

Can be used to do quality checks, visualizations and analysis of mass spectrometry data. MALDIViz App is a Shiny-based Web application, accessible independently of the operating system and without…

MetaMorpheus
Desktop

MetaMorpheus

Allows to search in proteomics database. MetaMorpheus integrates…

Allows to search in proteomics database. MetaMorpheus integrates post-translational modification (PTM) discovery capabilities. It analyses every database search result and for every frequently…

Most Popular Tools

Xlink Analyzer
Desktop

Xlink Analyzer

A software tool for visualization and analysis of cross-linking mass…

A software tool for visualization and analysis of cross-linking mass spectrometry (XL-MS) data in the context of the three-dimensional structures. Xlink Analyzer enables automatic visualization of…

Metriculator
Desktop

Metriculator

A software tool designed to facilitate long-term storage of extensive…

A software tool designed to facilitate long-term storage of extensive performance metrics. Metriculator features a web interface that generates interactive comparison plots for contextual…

BatMass
Desktop

BatMass

A software package which allows to perform quick quality control of raw LC/MS…

A software package which allows to perform quick quality control of raw LC/MS data through its fast visualization capabilities. BatMass also serves as a testbed for developers of LC/MS data…

OpenMS
Desktop

OpenMS

An algorithm to align LC-MS samples and to match corresponding ion species…

An algorithm to align LC-MS samples and to match corresponding ion species across samples.

Related Websites
Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.