Mass spectrometry-based untargeted proteomic software tools

MS-based untargeted proteomics steps

MS-based untargeted proteomics workflow

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MS-based untargeted proteomics workflow schema
A number of technologies can be used to study proteomes, but arguably none is more powerful than mass spectrometry (MS; Aebersold and Mann, 2003; Cravatt et al., 2007; Domon and Aebersold, 2010). There are two fundamentally different MS-based…

Mass spectrometry-based untargeted proteomic software tools

Most Recent Tools

SPA
Desktop

SPA Sparse Proteomics Analysis

Finds optimal feature vectors which are extremely sparse, allowing a highly…

Finds optimal feature vectors which are extremely sparse, allowing a highly accurate classification, and robust against noise. Sparse Proteomics Analysis (SPA) is an algorithm based on the theory of…

MrR
Desktop

MrR

Analyzes the mass spectrometry (MS) data for baseline correction, denoising,…

Analyzes the mass spectrometry (MS) data for baseline correction, denoising, peak detection, peak alignment, peak normalization, and biomarker discovery. MrR is an R package for the Mass spectrometry…

CIG-P
Desktop

CIG-P Circular Interaction Graph for Proteomics

Generates circular diagrams for visually appealing final representation of…

Generates circular diagrams for visually appealing final representation of affinity-purification mass spectrometry (AP-MS) data. CIG-P is aids to present AP-MS data to a wider audience and envisions…

DISMS2
Desktop

DISMS2

Calculates proteome-wide distances directly from MS/MS data. DISMS2 allows for…

Calculates proteome-wide distances directly from MS/MS data. DISMS2 allows for the choice of the spectrum distance measure and includes different spectra preprocessing and filtering steps that can be…

Most Popular Tools

Xlink Analyzer
Desktop

Xlink Analyzer

A software tool for visualization and analysis of cross-linking mass…

A software tool for visualization and analysis of cross-linking mass spectrometry (XL-MS) data in the context of the three-dimensional structures. Xlink Analyzer enables automatic visualization of…

Metriculator
Desktop

Metriculator

A software tool designed to facilitate long-term storage of extensive…

A software tool designed to facilitate long-term storage of extensive performance metrics. Metriculator features a web interface that generates interactive comparison plots for contextual…

BatMass
Desktop

BatMass

A software package which allows to perform quick quality control of raw LC/MS…

A software package which allows to perform quick quality control of raw LC/MS data through its fast visualization capabilities. BatMass also serves as a testbed for developers of LC/MS data…

OpenMS
Desktop

OpenMS

An algorithm to align LC-MS samples and to match corresponding ion species…

An algorithm to align LC-MS samples and to match corresponding ion species across samples.

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