Mass spectrometry-based untargeted proteomic software tools

MS-based untargeted proteomics steps

MS-based untargeted proteomics workflow

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MS-based untargeted proteomics workflow schema
A number of technologies can be used to study proteomes, but arguably none is more powerful than mass spectrometry (MS; Aebersold and Mann, 2003; Cravatt et al., 2007; Domon and Aebersold, 2010). There are two fundamentally different MS-based…

Mass spectrometry-based untargeted proteomic software tools

Most Recent Tools

IPPD
Desktop

IPPD Isotopic Peak Pattern Deconvolution

Provides functionality to extract isotopic peak patterns from raw mass spectra.…

Provides functionality to extract isotopic peak patterns from raw mass spectra. IPPD offers a flexible function which tries to estimate model parameters in a way tailored to the peak shapes in the…

SFINX
Desktop
Web

SFINX Straightforward Filtering INdeX

Provides access to the straightforward filtering index (SFINX) for the…

Provides access to the straightforward filtering index (SFINX) for the separation of true positive from false positive protein interactions in affinity purification – mass spectrometry (AP-MS)…

DiagnoProt
Desktop

DiagnoProt

Clusters millions of spectra and uses machine learning to shortlist…

Clusters millions of spectra and uses machine learning to shortlist high-quality unidentified mass spectra that are discriminative of different biological conditions. DiagnoProt is able to shortlist…

pkDACLASS
Desktop

pkDACLASS

Provides a complete data analysis solution for the users of MALDI-TOF MS…

Provides a complete data analysis solution for the users of MALDI-TOF MS proteomics raw data especially biomedical researchers with no statistics background. pkDACLASS classifies the samples based on…

Most Popular Tools

Xlink Analyzer
Desktop

Xlink Analyzer

A software tool for visualization and analysis of cross-linking mass…

A software tool for visualization and analysis of cross-linking mass spectrometry (XL-MS) data in the context of the three-dimensional structures. Xlink Analyzer enables automatic visualization of…

Metriculator
Desktop

Metriculator

A software tool designed to facilitate long-term storage of extensive…

A software tool designed to facilitate long-term storage of extensive performance metrics. Metriculator features a web interface that generates interactive comparison plots for contextual…

BatMass
Desktop

BatMass

A software package which allows to perform quick quality control of raw LC/MS…

A software package which allows to perform quick quality control of raw LC/MS data through its fast visualization capabilities. BatMass also serves as a testbed for developers of LC/MS data…

OpenMS
Desktop

OpenMS

An algorithm to align LC-MS samples and to match corresponding ion species…

An algorithm to align LC-MS samples and to match corresponding ion species across samples.

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