MS-Bridge statistics
MS-Bridge specifications
Information
Unique identifier | OMICS_27506 |
---|---|
Name | MS-Bridge |
Interface | Web user interface |
Restrictions to use | None |
Computer skills | Basic |
Stability | Stable |
Maintained | Yes |
Maintainer
- person_outline Robert Chalkley <>
Additional information
Publications for MS-Bridge
Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides.
MS-Bridge in publications
(7)The γ33 subunit of R phycoerythrin from Gracilaria chilensis has a typical double linked phycourobilin similar to γ subunit
[…] complex described above. the purified proteolytic fragments obtained after digestion, were characterized by spectroscopy and analyzed by mass spectrometry (ms) at the university of edinburgh. ms-bridge prospector platform (http://prospector.ucsf.edu) was used for search and identification. the elemental composition of modified cysteines and/or the chromophore as crosslinking agent […]
[…] tesque) as internal standards and with α-cyano-4-hydroxycinnamic acid (wako) as a matrix. spectra were obtained using ultraflex™ (bruker daltonics) in linear mode, and mass peaks were assigned using ms bridge (university of california, san francisco, ca)., it has been reported that agitation of apo-sod1s-s forms insoluble aggregates in the presence of 1 m gdn (chattopadhyay et al., ; toichi et […]
[…] for the mass range of 700–3500 amu. data was collected and analyzed using the data explorer software package (ab-sciex, framingham, ma) and mascot (ver.2.0.04, matrix science, boston, ma). ms-bridge analysis was done using protein prospector (ver.4.27.2 basic and ver.5.0, ucsf). the database search parameters were: (i) tryptic digest, (ii) oxidized met, (iii) 2 missed cleavages, […]
Developing New Isotope Coded Mass Spectrometry Cleavable Cross Linkers for Elucidating Protein Structures
[…] moieties for d0- (i.e., a, s, t) or d10-dmsso (i.e., a*, s*, t*) cross-linker, respectively. initial acceptance criteria for peptide identification required a reported expectation value ≤0.1., ms-bridge was used to confirm the identification of cross-linked peptides by mass mapping against bovine cytochrome c with the parent mass error set as ±10 ppm. the in-house program link-hunter […]
The monomeric GIY YIG homing endonuclease I BmoI uses a molecular anchor and a flexible tether to sequentially nick DNA
[…] regional proteomics facility. recovered peptides were subjected to matrix-assisted laser desorption/ionization time-of-flight (maldi-tof) mass spectrometry, and the results analyzed using the ucsf ms-bridge webpage. to delineate the boundary of the trypsin- and elastase-stable catalytic domain, liquid chromatography (lc) mass spectrometry was performed on a 3q mass spectrometer (micromass) […]
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