MS-Cluster statistics

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MS-Cluster specifications

Information


Unique identifier OMICS_04041
Name MS-Cluster
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MS-Cluster

MS-Cluster in publications

 (4)
PMCID: 5645330
PMID: 29042634
DOI: 10.1038/s41598-017-13831-0

[…] (left to right) are: cluster id number; number of spectra included in the cluster; cluster average mass-to-charge ratio (m/z); charge; average p value of cluster similarity as calculated by the ms cluster algortihm; the number of study subjects in which the cluster was quantified; median relative change in abundance between ad and c, between mci-ad and c, and between mci-s and c; area […]

PMCID: 5370242
PMID: 28405197
DOI: 10.3389/fpls.2017.00429

[…] filtered by removing all ms/ms peaks within a 17 da window of the precursor m/z and ms/ms spectra were filtered by choosing only the top 6 peaks in 50 da windows. the data was then clustered with ms-cluster (), with a precursor mass tolerance of 0.02 da and a ms/ms fragment ion tolerance of 0.02 da. consensus spectra with less than 2 spectra were discarded. a spectral network was then created […]

PMCID: 5098046
PMID: 27609420
DOI: 10.1074/mcp.O116.060913

[…] massive (http://massive.ucsd.edu), with the accession msv000079552., typically, ms/ms data sets contain substantial amounts of redundancy, with multiple spectra coming from the same peptide. we used ms-cluster (ver. 2.0) () to group spectra of the same peptides and compute cluster consensus spectra prior to spectral networks analysis. in brief, ms-cluster retains peaks in a cluster consensus […]

PMCID: 4812331
PMID: 26761036
DOI: 10.3390/metabo6010002

[…] using xcalibur version 2.2., hr-ms/ms raw data files were converted from .raw to .mzxml file format using the trans-proteomic pipeline (institute for systems biology, seattle) [], and clustered with ms-cluster using global natural products social (gnps) molecular networking [,,,]. a molecular network was created using the online workflow at gnps. the data was filtered by removing all ms/ms peaks […]


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MS-Cluster institution(s)
Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA

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