ms-data-core-api specifications


Unique identifier OMICS_08588
Name ms-data-core-api
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Juan Antonio Vizcaíno <>

Publication for ms-data-core-api

ms-data-core-api in publications

PMCID: 5571441
PMID: 28837811
DOI: 10.1016/j.cels.2017.07.007

[…] genomic coordinates and color coded for the type of modification., a separate fileconverter implemented in java supports standardized psi file formats such as mzidentml and mztab through use of ms-data-core-api. () furthermore, the file converter is integrated into a java implemented graphical user interface (gui) for pogo enabling non-bioinformaticians to map peptides to reference […]

PMCID: 5500760
PMID: 28515314
DOI: 10.1074/mcp.M117.068429

[…] updated in 2016 to fully support mzidentml, and the proteoidviewer (). some of these tools are reusing open source libraries tailored to the format such as jmzidentml (), mzid library (), and the ms-data-core-api (). finally, it is important to highlight that mzidentml is now fully supported as a data submission format, via the “complete” submission mechanism (enabling full search […]

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ms-data-core-api institution(s)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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