MS-Deconv statistics

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MS-Deconv specifications

Information


Unique identifier OMICS_04042
Name MS-Deconv
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages Java
Computer skills Advanced
Version 0.8
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Pavel Pevzner <>

Publication for MS-Deconv

MS-Deconv in publications

 (7)
PMCID: 5648493
PMID: 29075288
DOI: 10.1186/s40409-017-0135-6

[…] and confident automated processing of high resolution ms1 and ms2 data. the complex data obtained need to be deconvoluted to simplify the protein identification process and the softwares trash and ms-deconv are commonly used [, ]. prosight ptm was the first tool developed and further improved for a complete automated search using robust scores and statistics parameters to enable […]

PMCID: 4593959
PMID: 26439836
DOI: 10.1038/srep14755

[…] envelopes, respectively. in 2008, k. park et al. reported an isotopic peak-intensity ratio based on an algorithm for which all possible pseudo-envelopes were considered and oies could be identified. ms-deconv efficiently finds optimal set of envelopes through explicitly scoring combinations of candidate envelopes., it is worth noting that quite a few algorithms have been reported to interpret […]

PMCID: 4378558
PMID: 25523396
DOI: 10.1186/1471-2164-15-1140

[…] monoisotopic mass list, is a key step in top-down spectral interpretation., in this paper, we propose a new scoring function, l-score, for evaluating isotopomer envelopes. by combining l-score with ms-deconv, a new software tool, ms-deconv+, was developed for top-down spectral deconvolution. experimental results showed that ms-deconv+ outperformed existing software tools in top-down spectral […]

PMCID: 4144745
PMID: 24968279
DOI: 10.1021/ac501836k

[…] (thermo fisher scientific, bremen, germany), and the total rpc-ms data acquisition period was 80 min per sample., raw top two data-dependent ms data collected by xcalibur were first processed with ms-deconv, a combinatorial algorithm for reliable isotopic distribution deconvolution and charge state assignment for all the observed ions to generate msalign files containing monoisotopic mass, […]

PMCID: 4189000
PMID: 24969035
DOI: 10.1074/mcp.M114.040675

[…] accuracy. the most abundant mass is reported for intact proteins, whereas the monoisotopic mass is reported for fragment ions., the raw ms/ms data were converted to mzxml files and deconvoluted with ms-deconv (release version 0.8.0) (), a combinatorial algorithm that determines the monoisotopic mass and charge for all of the fragment ions present in an ms/ms spectrum. subsequently, to identify […]


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MS-Deconv institution(s)
Pharmacology, Chemistry and Biochemistry, University of California, San Diego, CA, USA; Department of Chemistry and Biochemistry, University of Maryland, College Park, MA, USA; Department of Biochemistry and Molecular and Cellular Biology, Georgetown University Medical Center, Washington, USA; Pasarow Mass Spectrometry Laboratory, Neuropysychiatric Institute-Semel Institute, University of California, Los Angeles, CA, USA
MS-Deconv funding source(s)
This work was supported by National Institutes of Health Grant P-41-RR024851 from the National Center for Research Resources.

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