MS-GFDB specifications
- Unique identifier:
- OMICS_02465
- Interface:
- Command line interface
- Input data:
- It takes a set of spectra (CID, ETD, or CID/ETD pairs) and a protein database as an input and outputs peptide matches. If the input is a set of CID/ETD pairs, it outputs the best scoring peptide matches and their p values (1) using only CID spectra, (2) using only ETD spectra, and (3) using combined spectra of CID/ETD pairs.
- Computer skills:
- Advanced
- Maintained:
- Yes
- Software type:
- Package/Module
- Restrictions to use:
- None
- Operating system:
- Unix/Linux
- Stability:
- Stable
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Publications
-
(Kim et al., 2010)
The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search.
Mol Cell Proteomics.
PMID: 20829449 DOI: 10.1074/mcp.M110.003731
Institution(s)
Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA
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