ms_lims statistics

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ms_lims specifications


Unique identifier OMICS_02547
Name ms_lims
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Database management system MySQL
Computer skills Medium
Version 7.7.7
Stability Stable
Maintained Yes


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Publication for ms_lims

ms_lims in publications

PMCID: 5847171
PMID: 29474907
DOI: 10.1016/j.cell.2018.01.031

[…] per million reads (fpkm) values. see and ., identified peptides were quantified using mascot distiller tool, version (matrix science in the precursor mode. all data management was done in ms-lims and data integration was performed using r ( embedded in knime. the results of analyses are shown as the peptide ratio of the light (l)-labeled (ccp1cko mice) versus […]

PMCID: 5672024
PMID: 29163463
DOI: 10.3389/fimmu.2017.01324

[…] were withheld. spectra identified as peptides modified with gsk866, uamc-1158, -1159, -1217, -1218, or dex were manually validated to ensure correct assignment. all data management was done by ms_lims ()., cofactor interactions (coactivators and co-repressors) of recombinant glucocorticoid receptor ligand-binding domain (gr-lbd) complexed with different ligands dex, gsk866, uamc-1217, […]

PMCID: 4893672
PMID: 27264994
DOI: 10.1038/srep27220

[…] as a source for p. furiosus proteins using a classical shotgun approach. the exact experimental details can be found in the ., identification data from the p. furiosus proteome was retrieved from ms_lims and used to compute metrics for the selection of optimal srm peptides. for every identified peptide, the average matched intensity was computed in each of the three discovery experiments […]

PMCID: 4738454
PMID: 26449181
DOI: 10.1002/pmic.201500295

[…] submitters to provide additional information, or to annotate this information automatically in the standard file formats. this work has already started, notable in lims systems such as maspectras , ms_lims , and proteios , but it will still take some time before it is straightforward to capture all the desired information., a related challenge is the provision of easy access to public data […]

PMCID: 4648992
PMID: 26612985
DOI: 10.1007/s11306-015-0879-3

[…] be added from within the xeml-lab software. other academic efforts also demonstrated the feasibility to export experimental data via metadata conversion to the isa-tab format as shown by the mastr-ms lims solution., another example for the export of metabolomics data into standard formats is the very positive interaction with software vendors such as biocrates ag (prs, personal […]

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ms_lims institution(s)
Department of Medical Protein Research, Ghent, Belgium; Department of Biochemistry, Ghent University, Ghent, Belgium; Department of Informatics, University of Bergen, Norway; ISAS – Institute for Analytical Sciences, Dortmund, Germany; Lehrstuhl fuer Bioinformatik, Institut fuer Informatik, Friedrich-Schiller-Universitaet Jena, Jena, Germany; European Molecular Biology Laboratory Outstation, European Bioinformatics Institute, Hinxton, Cambridge, UK
ms_lims funding source(s)
Institute for the Promotion of Innovation through Science and Technology in Flanders (IWT-Vlaanderen); Fund for Scientific Research – Flanders (Belgium). Grant Numbers: G.0077.06, G.0042.07; Concerted Research Actions. Grant Number: BOF07/GOA/012; Ghent University; Inter University Attraction Poles. Grant Number: IUAP06

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