ms_lims statistics

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ms_lims specifications

Information


Unique identifier OMICS_02547
Name ms_lims
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Database management system MySQL
Computer skills Medium
Version 7.7.7
Stability Stable
Maintained Yes

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Documentation


Publication for ms_lims

ms_lims in publications

 (13)
PMCID: 5847171
PMID: 29474907
DOI: 10.1016/j.cell.2018.01.031

[…] per million reads (fpkm) values. see and ., identified peptides were quantified using mascot distiller tool, version 2.4.3.3 (matrix science in the precursor mode. all data management was done in ms-lims and data integration was performed using r (http://www.r-project.org) embedded in knime. the results of analyses are shown as the peptide ratio of the light (l)-labeled (ccp1cko mice) versus […]

PMCID: 5672024
PMID: 29163463
DOI: 10.3389/fimmu.2017.01324

[…] were withheld. spectra identified as peptides modified with gsk866, uamc-1158, -1159, -1217, -1218, or dex were manually validated to ensure correct assignment. all data management was done by ms_lims ()., cofactor interactions (coactivators and co-repressors) of recombinant glucocorticoid receptor ligand-binding domain (gr-lbd) complexed with different ligands dex, gsk866, uamc-1217, […]

PMCID: 4893672
PMID: 27264994
DOI: 10.1038/srep27220

[…] as a source for p. furiosus proteins using a classical shotgun approach. the exact experimental details can be found in the ., identification data from the p. furiosus proteome was retrieved from ms_lims and used to compute metrics for the selection of optimal srm peptides. for every identified peptide, the average matched intensity was computed in each of the three discovery experiments […]

PMCID: 4738454
PMID: 26449181
DOI: 10.1002/pmic.201500295

[…] submitters to provide additional information, or to annotate this information automatically in the standard file formats. this work has already started, notable in lims systems such as maspectras , ms_lims , and proteios , but it will still take some time before it is straightforward to capture all the desired information., a related challenge is the provision of easy access to public data […]

PMCID: 4648992
PMID: 26612985
DOI: 10.1007/s11306-015-0879-3

[…] be added from within the xeml-lab software. other academic efforts also demonstrated the feasibility to export experimental data via metadata conversion to the isa-tab format as shown by the mastr-ms lims solution., another example for the export of metabolomics data into standard formats is the very positive interaction with software vendors such as biocrates ag (prs, personal […]


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ms_lims institution(s)
Department of Medical Protein Research, Ghent, Belgium; Department of Biochemistry, Ghent University, Ghent, Belgium; Department of Informatics, University of Bergen, Norway; ISAS – Institute for Analytical Sciences, Dortmund, Germany; Lehrstuhl fuer Bioinformatik, Institut fuer Informatik, Friedrich-Schiller-Universitaet Jena, Jena, Germany; European Molecular Biology Laboratory Outstation, European Bioinformatics Institute, Hinxton, Cambridge, UK
ms_lims funding source(s)
Institute for the Promotion of Innovation through Science and Technology in Flanders (IWT-Vlaanderen); Fund for Scientific Research – Flanders (Belgium). Grant Numbers: G.0077.06, G.0042.07; Concerted Research Actions. Grant Number: BOF07/GOA/012; Ghent University; Inter University Attraction Poles. Grant Number: IUAP06

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