MS2PIP statistics

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Associated diseases

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MS2PIP specifications

Information


Unique identifier OMICS_06872
Name MS2PIP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Peptide sequence(s)
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Sven Degroeve <>

Information


Unique identifier OMICS_06872
Name MS2PIP
Interface Web user interface
Restrictions to use None
Input data Peptide sequence(s)
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Sven Degroeve <>

Publications for MS2PIP

MS2PIP in publications

 (2)
PMCID: 5461538
PMID: 28432195
DOI: 10.1074/mcp.M116.066662

[…] for the delineation of tis, the minimum threshold rltm-rchx was set at 0.03 and a minimum profile coverage of 10 for all tis categories. all other parameters were set at their default values., the ms2pip prediction server () was used to compute the pearson correlation coefficient between the theoretical (cid model) and experimental spectra of identified tair10 database annotated n-terminal […]

PMCID: 4885829
PMID: 27303394
DOI: 10.3389/fmicb.2016.00813

[…] spectrometer and converted to ms2 files using makems2 software (thermo scientific). the data was then analyzed using crux (mcilwain et al., ) and mascot (cottrell and london, ), and the output of ms2pip (degroeve and martens, ) was used additional features for the percolator algorithm. spectra were obtained from each fraction of the gel (a total of 5 fractions per strain) and were viewed […]


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MS2PIP institution(s)
Department of Medical Protein Research, VIB, Ghent, Belgium; Department of Biochemistry, Faculty of Medicine and Health Sciences, Ghent University, Ghent, Belgium
MS2PIP funding source(s)
RIME-XS project of the Seventh Framework Program of the European Union [262067-PRIME-XS]; IWT SBO ‘INSPECTOR’ [120025]

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