Protocols

MS2PIP specifications

Information


Unique identifier OMICS_06872
Name MS2PIP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Peptide sequence(s)
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Sven Degroeve

Information


Unique identifier OMICS_06872
Name MS2PIP
Interface Web user interface
Restrictions to use None
Input data Peptide sequence(s)
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Sven Degroeve

Publications for MS2PIP

MS2PIP citations

 (2)
library_books

N terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana *

2017
PMCID: 5461538
PMID: 28432195
DOI: 10.1074/mcp.M116.066662

[…] TIS, two Nt-peptide sequences of different length were identified, which resulted from digestion by different proteases (see supplemental Table S2). To further assess the reliability of the PSMs, the MS2PIP prediction server () was used to compute the correlation between theoretical and observed MS2 spectra for TAIR10 database annotated and novel Nt-peptides. The average distribution of the trypti […]

call_split

Identification of Quantitative Proteomic Differences between Mycobacterium tuberculosis Lineages with Altered Virulence

2016
Front Microbiol
PMCID: 4885829
PMID: 27303394
DOI: 10.3389/fmicb.2016.00813
call_split See protocol

[…] ass spectrometer and converted to MS2 files using MakeMS2 software (Thermo Scientific). The data was then analyzed using Crux (McIlwain et al., ) and Mascot (Cottrell and London, ), and the output of MS2PIP (Degroeve and Martens, ) was used additional features for the Percolator algorithm. Spectra were obtained from each fraction of the gel (a total of 5 fractions per strain) and were viewed using […]

MS2PIP institution(s)
Department of Medical Protein Research, VIB, Ghent, Belgium; Department of Biochemistry, Faculty of Medicine and Health Sciences, Ghent University, Ghent, Belgium
MS2PIP funding source(s)
RIME-XS project of the Seventh Framework Program of the European Union [262067-PRIME-XS]; IWT SBO ‘INSPECTOR’ [120025]

MS2PIP reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MS2PIP