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MS2T specifications


Unique identifier OMICS_19224
Name MS2T
Alternative name MS/MS spectral tag
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • person_outline Kazuki Saito

Publication for MS/MS spectral tag

MS2T citations


From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] itoring; MRM-DIFF: Multiple Reaction Monitoring–Based Differential Analysis; MRMPROBS: Multiple Reaction Monitoring–Based Probabilistic System; MS: mass spectrometry; MS/MS: tandem mass spectrometry; MS2T: MS/MS spectral tag; MS-DIAL: Mass Spectrometry–Data Independent Analysis; MSFACT: Metabolomics Spectral Formatting, Alignment, and Conversion Tool; MUSCLE: Multi-Platform Unbiased Optimization o […]


Comparative metagenomics of biogas producing microbial communities from production scale biogas plants operating under wet or dry fermentation conditions

Biotechnol Biofuels
PMCID: 4329661
PMID: 25688290
DOI: 10.1186/s13068-014-0193-8

[…] itments were conducted as described previously []. Another objective of this analysis was to determine similarities of methanogens of both biogas plants to the genome of the type strain M. bourgensis MS2T []. For this purpose, metagenome sequence reads were searched for matches to completely sequenced microbial genomes stored in the National Center for Biotechnology Information (NCBI) database app […]


Integrated LC MS/MS system for plant metabolomics

Comput Struct Biotechnol J
PMCID: 3962214
PMID: 24688692
DOI: 10.5936/csbj.201301011

[…] . We expect that users of bioinformatics and metabolomics will be able to develop novel algorithms and methodologies by using our reusable data resources.More than one-million un-targeted MS/MS tags (MS2T) can be collected by high-speed scanning by LC-Q-TOF-MS [, ], but we only have a few thousand reference data. Given the sensitivity and extension of detectable metabolites in advanced MS instrume […]


Recent Progress in the Development of Metabolome Databases for Plant Systems Biology

Front Plant Sci
PMCID: 3616245
PMID: 23577015
DOI: 10.3389/fpls.2013.00073

[…] . () can evaluate actual concentration differences of metabolite peaks detected in two different types of samples (e.g., leaves and fruits), this allows to filter out all unavoidable artifacts in MST/MS2T data. Such a method will make it possible to reject analytical artifacts and prioritize unknown candidate metabolites for further characterization. […]


Mass Spectra Based Framework for Automated Structural Elucidation of Metabolome Data to Explore Phytochemical Diversity

Front Plant Sci
PMCID: 3355805
PMID: 22645535
DOI: 10.3389/fpls.2011.00040

[…] peaks) was obtained (Table S1 in Supplementary Material). The number of signals would not reflect an exact number of detected metabolites due to the complex nature of the metabolome data.To construct MS2T libraries, the extracts of five ecotypes were mixed and utilized for the MS2T data acquisition. The analyses were repeatedly conducted for four mixtures by previously described methods (Matsuda e […]


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MS2T institution(s)
RIKEN Plant Science Center, Yokohama, Japan; Graduate School of Pharmaceutical Sciences, Chiba University, Chiba, Japan
MS2T funding source(s)
Supported by Japan Science and Technology institute for Bioinformatics Research and Development (JST-BIRD) and the Research and Development Program for New Bio-industry Initiatives of Bio-oriented Technology Research Advancement Institution (BRAIN).

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