MSC specifications

Information


Unique identifier OMICS_00610
Name MSC
Alternative name Methylation Status Calling
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Source code URL http://www.stat.purdue.edu/~cheng70/code/sourcecode.zip
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Longjie Cheng

Additional information


http://www.stat.purdue.edu/~cheng70/code/readme.txt

Publication for Methylation Status Calling

MSC citation

library_books

Reducing the risk of false discovery enabling identification of biologically significant genome wide methylation status using the HumanMethylation450 array

2014
BMC Genomics
PMCID: 3943510
PMID: 24447442
DOI: 10.1186/1471-2164-15-51

[…] Figure S8 in Additional file provides a workflow of our probe filtering process which occurs prior to methylation status calling. Each step is outlined below:Determining probe uniqueness across genome: All probes which hybridize multiple locations in the genome have the possibility of providing confli […]

MSC institution(s)
Department of Statistics, Purdue University, West Lafayette, IN, USA
MSC funding source(s)
Supported by NSF-DMS-1000443.

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