MSFragger statistics

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MSFragger specifications


Unique identifier OMICS_17459
Name MSFragger
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Alexey Nesvizhskii <>

Additional information

Publication for MSFragger

MSFragger in publication

PMCID: 5780430
PMID: 29403507
DOI: 10.3389/fpls.2017.02210

[…] proteins (). a decoy database, consisting of the reversed sequences of the target database, was appended to discern the false-discovery rate (fdr). assignment of ms/ms spectra was performed using msfragger algorithm (). the msfragger closed search was configured to derive fully tryptic peptides with the following parameters: parent mass tolerance of 20 ppm, a fragment mass tolerance of 20 […]

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MSFragger institution(s)
Department of Computational Medicine and Bioinformatics, University of Michigan, MI, USA; Department of Pathology, University of Michigan, MI, USA

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