msgbsR specifications


Unique identifier OMICS_18143
Name msgbsR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.4.0
Stability Stable
methods, stats, plyr, parallel, IRanges, GenomicRanges, Rsamtools, utils, S4Vectors, GenomeInfoDb, GenomicAlignments, SummarizedExperiment, edgeR, ggplot2, BSgenome, GenomicFeatures, R.utils, ggbio, R(>=3.4), roxygen2, easyRNASeq, BSgenome.Rnorvegicus.UCSC.rn6
Maintained Yes




No version available



  • person_outline Benjamin Mayne

msgbsR citations


msgbsR: An R package for analysing methylation sensitive restriction enzyme sequencing data

Sci Rep
PMCID: 5794748
PMID: 29391490
DOI: 10.1038/s41598-018-19655-w

[…] The msgbsR package is a collection of functions that automate the process of identifying differentially methylated sites from a MRE-seq experiment, and enable visualisation of methylation-senstive sites w […]


Global DNA Methylation Patterns Can Play a Role in Defining Terroir in Grapevine (Vitis vinifera cv. Shiraz)

Front Plant Sci
PMCID: 5670326
PMID: 29163587
DOI: 10.3389/fpls.2017.01860

[…] f genetic clusters present in the three regions were computed using BIC as effected by DAPC using adegenet 2.0.0.Identification of significant DMMs between regions was then computed using the package msgbsR (accessed on 26/08/2016). In brief, raw sequencing data was first demultiplexed using GBSX () and filtered to remove any reads that did not match the barcode sequence used for library construct […]

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