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msHOT specifications

Information


Unique identifier OMICS_06845
Name msHOT
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for msHOT

msHOT citations

 (50)
library_books

Selection on the regulation of sympathetic nervous activity in humans and chimpanzees

2018
PLoS Genet
PMCID: 5908061
PMID: 29672586
DOI: 10.1371/journal.pgen.1007311

[…] n R scripts available at http://pop-gen.eu/wordpress/server-for-selective-sweep-detection for the 2Mb genomic region that spanned DHS2. Significance was estimated based on neutral models generated by msHOT [], which is a modified version of Hudson’s ms simulator []. iHS was developed [] on the basis of the EHH (extended haplotype homozygosity) statistic []. The EHH measures the decay of identity, […]

library_books

The genus Scaptodrosophila Duda part II: the coracina species group from East Asia, with morphological and molecular evidence (Diptera, Drosophilidae)

2018
Zookeys
PMCID: 5904429
PMID: 29674869
DOI: 10.3897/zookeys.736.13682

[…] An Mshot Camera was used to microphotograph specimens, photograph illustration and line drawings were processed with Adobe Photoshop 7.0 and Easy PaintTool SAI Ver.1.0.0. and are followed for the defin […]

library_books

Function of miR 146a 5p in Tumor Cells As a Regulatory Switch between Cell Death and Angiogenesis: Macrophage Therapy Revisited

2018
Front Immunol
PMCID: 5760497
PMID: 29354134
DOI: 10.3389/fimmu.2017.01931

[…] e with fluoromount G. Three washes with PBS were applied after each step. Images were acquired by upright fluorescent trinocular microscope (Olympus BX-60, Tokyo, Japan) using the MS60 camera and the MShot Image Analysis System V1 (MSHOT, Guangzhou Micro-shot Technology Co., Guangzhou, China). […]

library_books

Human glioma stem like cells induce malignant transformation of bone marrow mesenchymal stem cells by activating TERT expression

2017
Oncotarget
PMCID: 5732816
PMID: 29262650
DOI: 10.18632/oncotarget.22301

[…] ining with DAPI Staining Solution DAPI (C1005, Beyotime, Shanghai, China) for 3-5min. Finally, they were mounted in fluorescence quenching solution and observed under a fluorescence microscope (MF53, Mshot, Guangzhou, China). […]

library_books

Room Temperature Pressure Induced Optically Actuated Fabry Perot Nanomechanical Resonator with Multilayer Graphene Diaphragm in Air

2017
PMCID: 5707583
PMID: 29113035
DOI: 10.3390/nano7110366

[…] s in different grit sizes of 3 and 1 µm (Thorlabs® LF3D, LF1D, Newton, NJ, USA). The residuals on polished surface were cleaned by ultrasound equipment. a,b display the micrograph (microscope camera: Mshot®, MS60, Guangzhou, China) of a ferrule endface before and after polishing. Small burrs and impurities at the edge of circular hole can be clearly found in a, as well as stains and scratches on s […]

call_split

Effects of Demographic History on the Detection of Recombination Hotspots from Linkage Disequilibrium

2017
Mol Biol Evol
PMCID: 5850621
PMID: 29045724
DOI: 10.1093/molbev/msx272
call_split See protocol

[…] We used two coalescent-based programs to simulate chromosomes with a known recombination map and demographic history: (1) fin, included in LDhat2.1 () to simulate instanteous bottlenecks and (2) msHOT (), an extension of ms () to simulate all other demographic histories. We then used LDhat () to measure recombination rate along the simulated chromosomes and LDhot () to identify all statistica […]

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msHOT institution(s)
Department of Statistics, University of Oxford, Oxford, UK

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