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msHOT specifications

Information


Unique identifier OMICS_06845
Name msHOT
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for msHOT

msHOT in publications

 (43)
PMCID: 5908061
PMID: 29672586
DOI: 10.1371/journal.pgen.1007311

[…] r scripts available at http://pop-gen.eu/wordpress/server-for-selective-sweep-detection for the 2mb genomic region that spanned dhs2. significance was estimated based on neutral models generated by mshot [], which is a modified version of hudson’s ms simulator []. ihs was developed [] on the basis of the ehh (extended haplotype homozygosity) statistic []. the ehh measures the decay of identity, […]

PMCID: 5732816
PMID: 29262650
DOI: 10.18632/oncotarget.22301

[…] with dapi staining solution dapi (c1005, beyotime, shanghai, china) for 3-5min. finally, they were mounted in fluorescence quenching solution and observed under a fluorescence microscope (mf53, mshot, guangzhou, china)., the human telomerase reverse transcriptase (tert) primers were designed based on its mrna sequence available from the genbank (gene id: nm_198253.2) along with xbai […]

PMCID: 5707583
PMID: 29113035
DOI: 10.3390/nano7110366

[…] in different grit sizes of 3 and 1 µm (thorlabs® lf3d, lf1d, newton, nj, usa). the residuals on polished surface were cleaned by ultrasound equipment. a,b display the micrograph (microscope camera: mshot®, ms60, guangzhou, china) of a ferrule endface before and after polishing. small burrs and impurities at the edge of circular hole can be clearly found in a, as well as stains and scratches […]

PMCID: 5850621
PMID: 29045724
DOI: 10.1093/molbev/msx272

[…] that may contribute to this deviation: (1) eight hotspots (instead of one) were simulated on each scaffold and (2) a different coalescent simulator was used to simulate the sequence data (fin: vs. mshot: ). strikingly, we found that the background recombination rate substantially affected performance among the control simulations, and in some cases, even reversed the relationship […]

PMCID: 5594565
PMID: 28893173
DOI: 10.1186/s12862-017-1046-4

[…] haplotypes hism are free of homoplasy while the haplotypes hsmm can contain homoplasious mutations. these coalescent simulations were performed using a modified a version of the coalescent simulator mshot [, ]. the modified version of mshot is available at https://github.com/dortegadelv/homoplasymetrics., we studied the relationship between homoplasy and the underestimation of the population […]


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msHOT institution(s)
Department of Statistics, University of Oxford, Oxford, UK

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