mSINGS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool mSINGS
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Tool usage distribution map

This map represents all the scientific publications referring to mSINGS per scientific context
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Associated diseases

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Popular tool citations

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mSINGS specifications

Information


Unique identifier OMICS_20469
Name mSINGS
Alternative name MSI by NGS
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A sample of interest aligned against reference genome, with the locations of the microsatellite tracts of interest.
Input format BAM, FASTA, BED
Output data The distribution of alleles of differing length.
Output format TXT
Operating system Unix/Linux
Programming languages Perl, Python, Shell (Bash)
Computer skills Advanced
Version 3.1
Stability Stable
Requirements
Numpy
Maintained Yes

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Versioning


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Maintainers


  • person_outline Colin Pritchard
  • person_outline Sheena Scroggins

Publication for MSI by NGS

mSINGS citation

library_books

Complex MSH2 and MSH6 mutations in hypermutated microsatellite unstable advanced prostate cancer

2014
Nat Commun
PMCID: 4176888
PMID: 25255306
DOI: 10.1038/ncomms5988

[…] e resolution of individual exons using custom Perl scripts. CNV plots were visualized using the R package ggplot2.Phenotypic MSI was assessed directly from BROCA next-generation sequencing data using mSINGS (MSI by NGS). This method evaluated up to 146 mononucleotide microsatellite loci that are captured by BROCA in both matched normal non-tumour and tumour samples. For each specimen, microsatelli […]


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mSINGS institution(s)
Department of Laboratory Medicine, University of Washington, Seattle, WA, USA; Department of Internal Medicine, Division of Human Genetics, The Ohio State University, Columbus, OH, USA
mSINGS funding source(s)
Supported by 2013 Young Investigator Award from the Prostate Cancer Foundation.

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