msInspect pipeline

msInspect specifications

Information


Unique identifier OMICS_02384
Name msInspect
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Martin McIntosh <>

Publication for msInspect

msInspect IN pipelines

 (3)
2017
PMCID: 5370288
PMID: 28367086
DOI: 10.7150/ijms.17792

[…] to the open file format mzxml via readw.exe, which is available in the trans-proteomic pipeline (tpp) platform (http://tools.proteomecenter.org/software.php). an open-source computer program, msinspect, was utilized to locate isotopes in the lc-ms data and assemble the isotopes into peptides. the msinspect software is distributed freely under an apache 2.0 license and is available […]

2017
PMCID: 5370288
PMID: 28367086
DOI: 10.7150/ijms.17792

[…] platform (http://tools.proteomecenter.org/software.php). an open-source computer program, msinspect, was utilized to locate isotopes in the lc-ms data and assemble the isotopes into peptides. the msinspect software is distributed freely under an apache 2.0 license and is available at http://proteomics.fhcrc.org/. lc-ms data files that were represented in the standard mzxml data format […]

2009
PMCID: 2649809
PMID: 18984577
DOI: 10.1074/mcp.M800231-MCP200

[…] rate ≤0.05 were kept. lc-ms peptide intensity values for the peptides were normalized across runs, and peptide ratios were calculated. the amt database and matching were performed using the msinspect/amt software platform (36, 37). protein inference was performed using proteinprophet, and protein ratios were calculated as well. as with the lab 3 analysis, experiments were aligned using […]

msInspect institution(s)
LabKey Software, Seattle, WA, USA

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