MSIpred specifications

Information


Unique identifier OMICS_33245
Name MSIpred
Alternative name Microsatellite instability prediction
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some files containing tumor somatic mutation annotation information derived from paired tumor-normal whole exome sequencing data, a reference fle indicating loci of simple sequence repeats regions throughout genome, and length (Mb) of overall captured sequences used for exome sequencing.
Input format MAF
Output data A pandas dataframe containing predicted MSI status of tumors.
Operating system Unix/Linux, Mac OS
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Chun Liang

Publication for Microsatellite instability prediction

MSIpred institution(s)
Department of Biology, Miami University, Oxford, OH, USA; Department of Computer Science & Software Engineering, Miami University, Oxford, OH, USA
MSIpred funding source(s)
Supported by by the Committee on Faculty Research (CRF) Program, the Office for the Advancement of Research & Scholarship (OARS), the Department of Biology, and Cell, Molecular and Structural (CMSB) Graduate Program, Miami University, Oxford, Ohio, USA.

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