MSOAR protocols

View MSOAR computational protocol

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Associated diseases

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MSOAR specifications


Unique identifier OMICS_09218
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes


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  • person_outline Guanqun Shi <>

Publications for MSOAR

MSOAR in pipeline

PMCID: 4303118
PMID: 25200860
DOI: 10.1186/s13058-014-0437-3

[…] data were extracted from protein interaction network analysis (pina) [],[]; substrate–kinase relationship information was obtained from phosphositeplus []; and mouse-human orthologues extracted from msoar []. the networks were generated using a cytoscape pina4ms plugin (hc lee, m pinese, l bourbon, i rooman, rj daly, av biankin, j wu, manuscript under preparation. url: […]

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MSOAR in publications

PMCID: 5865737
PMID: 29570742
DOI: 10.1371/journal.pone.0194786

[…] iscore,[] the acute stroke registry and analysis of lausanne (astral) score,[] the modified-stroke subtype, oxfordshire community stroke project classification, age, and prestroke modified rankin (msoar),[] are among the tools with the higher prognostic accuracy., the iscore includes age, sex, stroke severity, stroke subtype, smoking status, preadmission dependency, and the presence or absence […]

PMCID: 5500336
PMID: 28683108
DOI: 10.1371/journal.pone.0180444

[…] ylw dw yjw xll cjw., it is unclear in chinese patients with acute stroke how the soar (stroke subtype, oxfordshire community stroke project classification, age, and prestrike modified rankin) and msoar (modified-soar) scores performed in predicting discharge mortality and 3-month mortality. we aimed to validate the predictability of these scores in this cohort., data from the china national […]

PMCID: 5014158
PMID: 27436282
DOI: 10.1093/jxb/erw275

[…] before k-means clustering was conducted using r., genome-wide maize and rice orthologous gene pairs were identified by a combination of tools including bbh-ls (), orthomcl (), inparanoid (), msoar2 (), and the ensembl database (). the results were organized based on the following principles. first, the results from bbh-ls, which is the most stringent method (), were used as the basis. […]

PMCID: 4454876
PMID: 26089837
DOI: 10.3389/fgene.2015.00201

[…] conserved proteins tend to have conserved interactions when the proteins retain orthologous functions. software programs such as inparanoid (ostlund et al., ), orthomcl (li et al., ), and msoar (geer et al., ), along with many others, have been developed in order to discover all orthologs and outparalogs (duplications prior to divergence of species) between two or more genomes, […]

PMCID: 4223023
PMID: 25375783
DOI: 10.1371/journal.pone.0112341

[…] the detection of syntenic regions at different sensitivities., positional orthology is an umbrella term for all ortholog prediction methods that rely on gene neighborhood, such as localsynteny or msoar , . they aim to produce a one-to-one mapping of genes by taking the direct neighbors of all orthologs into account and attempt to delineate orthologs based on the evolutionary time point […]

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MSOAR institution(s)
Department of Computer Science, University of California, Riverside, CA, USA

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